Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 145 7e-30
seq13894 125 6e-24
seq7061 84.2 2e-11
>seq12471
Length=105862
Score = 145 bits (160), Expect = 7e-30
Identities = 172/230 (75%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || || ||| | || || ||||||| ||| |
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||||||| | || |||| || | ||| ||||||||||||||||| || ||
Sbjct 73280 GACACTATCGAG--AATGTAAAAGCCAAGATTCAA-GACAAAGAAGGGATTCCTCCGGAT 73224
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | ||||| || || |||||||| ||||||| ||||| | ||||||||
Sbjct 73223 CAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTAC 73164
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || |||||||| ||||| || || ||||| ||| | ||||| ||
Sbjct 73163 AACATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGG 73114
Score = 143 bits (158), Expect = 2e-29
Identities = 161/213 (76%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || |||| || || ||||||| | ||||| ||| | |
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| |||| |||| || | || |||||||||||||| ||||| ||
Sbjct 73052 GACACTATCGAAAATGTCA---AAGCCAAGATCCAA-GACAAAGAAGGGATCCCACCAGA 72997
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||||| | || ||||| || |||||| | ||||||| |||||| | |||||||
Sbjct 72996 TCAACAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTA 72937
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||| ||||| |||||||| ||||| ||||| ||
Sbjct 72936 CAACATTCAGAAAGAATCAACGCTTCATTTGGT 72904
Score = 141 bits (156), Expect = 8e-29
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || ||| | || || || |||| || ||||||| ||| |
Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| |||||| | || |||| |||| ||| || || ||||| || ||||| ||
Sbjct 72535 GACACGATCGAG--AATGTAAAAGCTAAAATTCAA-GATAAGGAAGGAATCCCACCCGAT 72479
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | ||||||||||| ||||| || || |||| |||||| | |||| |||
Sbjct 72478 CAACAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTAC 72419
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| ||||||||||| || || || ||||| ||| | ||||| ||
Sbjct 72418 AACATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGG 72369
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || || | || || ||| |||| || | ||||| ||| |
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| || || ||| |||| || ||| ||||||||||||||||| || || ||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || ||||| |||||||| ||||||| ||||||| || |||| |||||
Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| |||||||| || || || || |||||
Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGTGCT 73419
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || |||| || || |||||||| | ||||| ||| | |
Sbjct 72367 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACATTGGAAGTCGAGCCAAGT 72308
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| || ||| |||||||| || ||||| || ||||||
Sbjct 72307 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCGCCCGACCAA 72248
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||| || |||||| | || |||| |||||| || ||||||||||
Sbjct 72247 CAGCGATTGATCTTTGCTGGTAAACAACTCGAGGATGGTCGCACATTGAGCGATTACAAC 72188
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|| ||||| || |||||||| || || || | |||||
Sbjct 72187 ATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGGCT 72150
>seq13894
Length=1211295
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||||| ||||| || |||| || ||||||| || | ||
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| |||||| ||||||||||| || ||||| ||||||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | |||||||| || || ||||| ||||||| || || || |||||||||
Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| || || ||||| || || ||||| ||
Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGT 231508
Score = 113 bits (124), Expect = 4e-20
Identities = 154/214 (72%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || ||||| || || || ||||||| | ||||| || | ||
Sbjct 231946 AATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTC 231887
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| ||||| |||||| ||||||||||| ||||| || || ||
Sbjct 231886 CGATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCA 231827
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || |||||||| |||||| | ||||||| || || || ||||||||
Sbjct 231826 GCAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACAA 231767
Query 25178 TATTCA-AAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||| ||||| || || ||| | |||||
Sbjct 231766 CATCCAGAAAGGAATCGACCCTTCATCTTGTGCT 231733
>seq7061
Length=6671
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059
|||| || ||||| || ||||| || || |||||||| || | || ||| || |
Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGAGCATTCGG 2823
Query 25060 ACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119
| || ||| | | | || |||| || || |||||||| || |||| ||||| |
Sbjct 2824 ATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGC 2883
Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179
| | | || ||||| || ||||| ||||||||||| | | | ||||||||||
Sbjct 2884 AAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAATA 2943
Query 25180 TTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213
| || |||||| ||| |||||||||| ||||
Sbjct 2944 TACAGAAAGAAAACACTTTACATTTAGTATTAAG 2977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433250160614285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |