Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12471 145 7e-30 seq13894 125 6e-24 seq7061 84.2 2e-11 >seq12471 Length=105862 Score = 145 bits (160), Expect = 7e-30 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| | || || ||||||| ||| | Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||||||| | || |||| || | ||| ||||||||||||||||| || || Sbjct 73280 GACACTATCGAG--AATGTAAAAGCCAAGATTCAA-GACAAAGAAGGGATTCCTCCGGAT 73224 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| || || |||||||| ||||||| ||||| | |||||||| Sbjct 73223 CAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTAC 73164 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| ||||| || || ||||| ||| | ||||| || Sbjct 73163 AACATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGG 73114 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||| || || ||||||| | ||||| ||| | | Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | || |||||||||||||| ||||| || Sbjct 73052 GACACTATCGAAAATGTCA---AAGCCAAGATCCAA-GACAAAGAAGGGATCCCACCAGA 72997 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| || |||||| | ||||||| |||||| | ||||||| Sbjct 72996 TCAACAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTA 72937 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| ||||| |||||||| ||||| ||||| || Sbjct 72936 CAACATTCAGAAAGAATCAACGCTTCATTTGGT 72904 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || |||| || ||||||| ||| | Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| ||| || || ||||| || ||||| || Sbjct 72535 GACACGATCGAG--AATGTAAAAGCTAAAATTCAA-GATAAGGAAGGAATCCCACCCGAT 72479 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||||||||| ||||| || || |||| |||||| | |||| ||| Sbjct 72478 CAACAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTAC 72419 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||||||||| || || || ||||| ||| | ||||| || Sbjct 72418 AACATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGG 72369 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || || ||| |||| || | ||||| ||| | Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || ||| |||| || ||| ||||||||||||||||| || || || Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| |||||||| ||||||| ||||||| || |||| ||||| Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| |||||||| || || || || ||||| Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGTGCT 73419 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||| || || |||||||| | ||||| ||| | | Sbjct 72367 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACATTGGAAGTCGAGCCAAGT 72308 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| |||||||| || ||||| || |||||| Sbjct 72307 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCGCCCGACCAA 72248 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || |||||| | || |||| |||||| || |||||||||| Sbjct 72247 CAGCGATTGATCTTTGCTGGTAAACAACTCGAGGATGGTCGCACATTGAGCGATTACAAC 72188 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || ||||| || |||||||| || || || | ||||| Sbjct 72187 ATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGGCT 72150 >seq13894 Length=1211295 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| ||||| || |||| || ||||||| || | || Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||||||||| || ||||| |||||| Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || ||||| ||||||| || || || ||||||||| Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || ||||| || || ||||| || Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGT 231508 Score = 113 bits (124), Expect = 4e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||||| || || || ||||||| | ||||| || | || Sbjct 231946 AATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTC 231887 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| |||||| ||||||||||| ||||| || || || Sbjct 231886 CGATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCA 231827 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| |||||| | ||||||| || || || |||||||| Sbjct 231826 GCAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACAA 231767 Query 25178 TATTCA-AAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||| ||||| || || ||| | ||||| Sbjct 231766 CATCCAGAAAGGAATCGACCCTTCATCTTGTGCT 231733 >seq7061 Length=6671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| || ||||| || ||||| || || |||||||| || | || ||| || | Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGAGCATTCGG 2823 Query 25060 ACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 | || ||| | | | || |||| || || |||||||| || |||| ||||| | Sbjct 2824 ATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGC 2883 Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 | | | || ||||| || ||||| ||||||||||| | | | |||||||||| Sbjct 2884 AAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAATA 2943 Query 25180 TTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 | || |||||| ||| |||||||||| |||| Sbjct 2944 TACAGAAAGAAAACACTTTACATTTAGTATTAAG 2977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433250160614285