Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq13338 159 4e-34 seq13458 158 1e-33 seq477 152 6e-32 seq13941 132 5e-26 seq13244 127 2e-24 seq12593 107 2e-18 >seq13338 Length=646138 Score = 159 bits (176), Expect = 4e-34 Identities = 253/356 (71%), Gaps = 5/356 (1%) Strand=Plus/Plus Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168 |||||| |||||| || | || || || || ||||| || || || || | ||| || || Sbjct 454018 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 454075 Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 |||||| |||||||||||||| || || ||| ||||| || || ||||| ||||| || Sbjct 454076 TTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 454135 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288 ||| || | || || ||| | || | || | || | | |||||| | | |||||| Sbjct 454136 AAAAGCGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 454195 Query 93289 -ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347 | || ||| || | | ||| || | || ||||| ||||| || | || | || | Sbjct 454196 CAACGCCTTCTTGC-GCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTT 454254 Query 93348 CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCT 93407 || ||| | ||||| |||| || || || ||||| || ||||||| ||||| Sbjct 454255 TCATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCT 454314 Query 93408 CCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 | || |||||||||||||| || ||| | | |||||||||||| | ||| |||||| Sbjct 454315 CAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 454370 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || | ||||||||||||||| ||||| ||||| || | |||||||||||||| | | Sbjct 454609 TTGGATAAATCGACTTCTTCGACGGTCCAGAACGACGCCACAGCTTTTTTGTACATTTTC 454668 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || | ||| ||||| | ||||| || |||||||| || || || | ||||| | | Sbjct 454669 CACACGTCGTGATAGTCGATTGGGAAAATGACAAACCGGTTTGGACTGTCTTTCAAAAGG 454728 Query 93701 GGCTCT 93706 |||||| Sbjct 454729 GGCTCT 454734 >seq13458 Length=7495 Score = 158 bits (174), Expect = 1e-33 Identities = 237/334 (71%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 93131 AACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAA 93190 || || || ||||| || || || || | ||| || |||||||| ||||||||||| || Sbjct 6504 AATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCGAC 6445 Query 93191 GCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCA 93250 || || | | ||||| || || ||||| ||||| || || || | || || ||| || Sbjct 6444 GCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGCCA 6385 Query 93251 AAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA-ATCGGCTTTTTTCTTAATACA 93309 || | || | || | |||||||| | | |||||| | || ||| || | | ||| Sbjct 6384 AATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC-ACA 6326 Query 93310 AGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGT 93369 ||| | || ||||| ||||| || | |||| || | || || | ||||| || Sbjct 6325 AGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATCGTGTCCTGGATGTAAGT 6266 Query 93370 ATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429 || || || ||| ||||| ||||||| || |||||| || |||||||||||||| || Sbjct 6265 ATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATCCATA 6206 Query 93430 GAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 ||| | | |||||||||||| | ||| |||||| Sbjct 6205 AAAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 6172 Score = 141 bits (156), Expect = 1e-28 Identities = 249/356 (70%), Gaps = 5/356 (1%) Strand=Plus/Minus Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168 |||||| |||||| || | || || || || ||||| || || || || | ||| || || Sbjct 2913 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 2856 Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 |||||| ||||||||||| || || || | | ||||| || || ||||| ||||| || Sbjct 2855 TTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGC 2796 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288 | || | || || ||| | || | || | || | | |||||| | | |||||| Sbjct 2795 GTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 2736 Query 93289 -ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347 | || ||| | | | |||||| | || ||||| ||||| || | |||| || | Sbjct 2735 CAACGCCTTCGTGCGCAC-ACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTT 2677 Query 93348 CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCT 93407 || || | ||||| |||| || || || ||||| ||||||| || ||||| Sbjct 2676 TCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCT 2617 Query 93408 CCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 | || |||||||||||||| || ||| | | |||||||||||| | ||| |||||| Sbjct 2616 CAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 2561 >seq477 Length=28440 Score = 152 bits (168), Expect = 6e-32 Identities = 252/356 (71%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168 |||||| |||||| || | || || || || ||||| || || || || | ||| || || Sbjct 7180 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 7237 Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 |||||| ||||||||||| || || || | | ||||| || || ||||| ||||| || Sbjct 7238 TTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGC 7297 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288 || || | || |||||| | || | || | || | | |||||| | | |||||| Sbjct 7298 GAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 7357 Query 93289 -ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347 | || ||| || | | |||||| | || ||||| ||||| || | |||| || | Sbjct 7358 CAACGCCTTCTTGC-GCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTT 7416 Query 93348 CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCT 93407 || || | ||||| |||| || || || ||||| ||||||| || ||||| Sbjct 7417 TCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCT 7476 Query 93408 CCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 | || |||||||||||||| || ||| | | |||||||||||| | ||| |||||| Sbjct 7477 CAATCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 7531 >seq13941 Length=98454 Score = 132 bits (146), Expect = 5e-26 Identities = 253/366 (69%), Gaps = 5/366 (1%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTC 93172 |||| |||| || | ||||| ||||||||||| || || || || | || |||||||| Sbjct 98381 CTTCATCTC-TGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCGTTT- 98324 Query 93173 TTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAAT 93232 || | |||||| || || || ||| || || ||||| || ||||| || || || || Sbjct 98323 TTCATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAA 98264 Query 93233 GCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA-ATC 93291 || |||| || ||| | || | || | || | | |||||| | | ||||| | | Sbjct 98263 GCTACAACTCGCTCGCCGAACGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAAC 98204 Query 93292 GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTC 93351 | ||| || | | || || | || ||||| || ||||| | | || ||||| Sbjct 98203 GCCTTCTTACGCACG-CACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT 98145 Query 93352 CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCAT 93411 ||| || | ||||| |||| ||| || ||| |||||||| || || || ||||| || Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085 Query 93412 TGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCT 93471 || ||||||||||| ||| ||| ||||| || || ||||| |||||| || || Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCTTGACTGAACCT 98025 Query 93472 CTCTAC 93477 ||| || Sbjct 98024 CTCCAC 98019 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| || | ||||||||||||| ||||||| ||||| ||| | |||||||||||||| | Sbjct 96922 CTTTGGATAAATCGACTTCTTCGGCAGTCCAGAACGAAGCTACAGCTTTTTTGTACATTT 96863 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 ||| | || ||||| || || || || || || || || Sbjct 96862 TCCACACATCGTGATACTGGATCGGGAAAATCACGAACCG 96823 >seq13244 Length=114396 Score = 127 bits (140), Expect = 2e-24 Identities = 250/362 (69%), Gaps = 11/362 (3%) Strand=Plus/Plus Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168 |||||| |||||| || | || || || || ||||| || || || || | ||| || || Sbjct 3492 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 3549 Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTA-----CCAGaaaaaaaTATACCTTCCACG 93223 |||||| ||||||||||| || || | | | || ||||| || || ||||| ||| Sbjct 3550 TTTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 3609 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || || || || | || || ||| | || | || | || | | |||||| | | | Sbjct 3610 GCCGCGAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGA 3669 Query 93284 GCCCA-ATCGGCTTTTTTCTTAATACAAGGTAGTGT-TTCGATAGCGTTAAATAGGTAAT 93341 ||||| | || ||| || | | |||||| | || || || | |||||| | |||| Sbjct 3670 GCCCACAACGCCTTCTTGCGCAC-ACAAGGCATCGTCTTAAATCGTGTTAAACAAATAAT 3728 Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGA 93401 || | || || | ||||| |||| || || || ||||| ||||||| || Sbjct 3729 TTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGA 3788 Query 93402 CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTT 93461 |||||| || |||||||||||||| || ||| | | ||||||| |||| | ||| |||| Sbjct 3789 TATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTT 3848 Query 93462 GA 93463 || Sbjct 3849 GA 3850 >seq12593 Length=225266 Score = 107 bits (118), Expect = 2e-18 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGG-GAGC 126322 ||||||| ||||||||||||||||||||||||| |||||||||||| | ||| || | || Sbjct 85685 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGTCCTCCTAGGAGGGC 85626 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||| | |||||| Sbjct 85625 GTGGGTTCGAACCCCACTCTTGACAA 85600 Score = 100 bits (110), Expect = 3e-16 Identities = 78/92 (85%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----G 126317 || ||||||| ||||||||||||||||||||||||| |||||||||||| |||| | Sbjct 85851 TAGAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGT--CCTCAAATG 85794 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 | |||||||||| |||||||| |||||||| Sbjct 85793 AGGGCGTGGGTTCAAACCCCACTTCTGACAAA 85762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556758205358360