Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 159 4e-34
seq13458 158 1e-33
seq477 152 6e-32
seq13941 132 5e-26
seq13244 127 2e-24
seq12593 107 2e-18
>seq13338
Length=646138
Score = 159 bits (176), Expect = 4e-34
Identities = 253/356 (71%), Gaps = 5/356 (1%)
Strand=Plus/Plus
Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168
|||||| |||||| || | || || || || ||||| || || || || | ||| || ||
Sbjct 454018 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 454075
Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228
|||||| |||||||||||||| || || ||| ||||| || || ||||| ||||| ||
Sbjct 454076 TTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 454135
Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288
||| || | || || ||| | || | || | || | | |||||| | | ||||||
Sbjct 454136 AAAAGCGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 454195
Query 93289 -ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347
| || ||| || | | ||| || | || ||||| ||||| || | || | || |
Sbjct 454196 CAACGCCTTCTTGC-GCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTT 454254
Query 93348 CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCT 93407
|| ||| | ||||| |||| || || || ||||| || ||||||| |||||
Sbjct 454255 TCATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCT 454314
Query 93408 CCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463
| || |||||||||||||| || ||| | | |||||||||||| | ||| ||||||
Sbjct 454315 CAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 454370
Score = 93.3 bits (102), Expect = 5e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640
|| || | ||||||||||||||| ||||| ||||| || | |||||||||||||| | |
Sbjct 454609 TTGGATAAATCGACTTCTTCGACGGTCCAGAACGACGCCACAGCTTTTTTGTACATTTTC 454668
Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700
|| | ||| ||||| | ||||| || |||||||| || || || | ||||| | |
Sbjct 454669 CACACGTCGTGATAGTCGATTGGGAAAATGACAAACCGGTTTGGACTGTCTTTCAAAAGG 454728
Query 93701 GGCTCT 93706
||||||
Sbjct 454729 GGCTCT 454734
>seq13458
Length=7495
Score = 158 bits (174), Expect = 1e-33
Identities = 237/334 (71%), Gaps = 2/334 (1%)
Strand=Plus/Minus
Query 93131 AACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAA 93190
|| || || ||||| || || || || | ||| || |||||||| ||||||||||| ||
Sbjct 6504 AATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCGAC 6445
Query 93191 GCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCA 93250
|| || | | ||||| || || ||||| ||||| || || || | || || ||| ||
Sbjct 6444 GCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGCCA 6385
Query 93251 AAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA-ATCGGCTTTTTTCTTAATACA 93309
|| | || | || | |||||||| | | |||||| | || ||| || | | |||
Sbjct 6384 AATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC-ACA 6326
Query 93310 AGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGT 93369
||| | || ||||| ||||| || | |||| || | || || | ||||| ||
Sbjct 6325 AGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATCGTGTCCTGGATGTAAGT 6266
Query 93370 ATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429
|| || || ||| ||||| ||||||| || |||||| || |||||||||||||| ||
Sbjct 6265 ATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATCCATA 6206
Query 93430 GAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463
||| | | |||||||||||| | ||| ||||||
Sbjct 6205 AAAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 6172
Score = 141 bits (156), Expect = 1e-28
Identities = 249/356 (70%), Gaps = 5/356 (1%)
Strand=Plus/Minus
Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168
|||||| |||||| || | || || || || ||||| || || || || | ||| || ||
Sbjct 2913 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 2856
Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228
|||||| ||||||||||| || || || | | ||||| || || ||||| ||||| ||
Sbjct 2855 TTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGC 2796
Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288
| || | || || ||| | || | || | || | | |||||| | | ||||||
Sbjct 2795 GTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 2736
Query 93289 -ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347
| || ||| | | | |||||| | || ||||| ||||| || | |||| || |
Sbjct 2735 CAACGCCTTCGTGCGCAC-ACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTT 2677
Query 93348 CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCT 93407
|| || | ||||| |||| || || || ||||| ||||||| || |||||
Sbjct 2676 TCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCT 2617
Query 93408 CCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463
| || |||||||||||||| || ||| | | |||||||||||| | ||| ||||||
Sbjct 2616 CAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 2561
>seq477
Length=28440
Score = 152 bits (168), Expect = 6e-32
Identities = 252/356 (71%), Gaps = 6/356 (2%)
Strand=Plus/Plus
Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168
|||||| |||||| || | || || || || ||||| || || || || | ||| || ||
Sbjct 7180 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 7237
Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228
|||||| ||||||||||| || || || | | ||||| || || ||||| ||||| ||
Sbjct 7238 TTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGC 7297
Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288
|| || | || |||||| | || | || | || | | |||||| | | ||||||
Sbjct 7298 GAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 7357
Query 93289 -ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT 93347
| || ||| || | | |||||| | || ||||| ||||| || | |||| || |
Sbjct 7358 CAACGCCTTCTTGC-GCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTT 7416
Query 93348 CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCT 93407
|| || | ||||| |||| || || || ||||| ||||||| || |||||
Sbjct 7417 TCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCT 7476
Query 93408 CCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463
| || |||||||||||||| || ||| | | |||||||||||| | ||| ||||||
Sbjct 7477 CAATCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTTTCACCTCTTGA 7531
>seq13941
Length=98454
Score = 132 bits (146), Expect = 5e-26
Identities = 253/366 (69%), Gaps = 5/366 (1%)
Strand=Plus/Minus
Query 93114 CTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTC 93172
|||| |||| || | ||||| ||||||||||| || || || || | || ||||||||
Sbjct 98381 CTTCATCTC-TGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCGTTT- 98324
Query 93173 TTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAAT 93232
|| | |||||| || || || ||| || || ||||| || ||||| || || || ||
Sbjct 98323 TTCATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAA 98264
Query 93233 GCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA-ATC 93291
|| |||| || ||| | || | || | || | | |||||| | | ||||| | |
Sbjct 98263 GCTACAACTCGCTCGCCGAACGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAAC 98204
Query 93292 GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTC 93351
| ||| || | | || || | || ||||| || ||||| | | || |||||
Sbjct 98203 GCCTTCTTACGCACG-CACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT 98145
Query 93352 CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCAT 93411
||| || | ||||| |||| ||| || ||| |||||||| || || || ||||| ||
Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085
Query 93412 TGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCT 93471
|| ||||||||||| ||| ||| ||||| || || ||||| |||||| || ||
Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCTTGACTGAACCT 98025
Query 93472 CTCTAC 93477
||| ||
Sbjct 98024 CTCCAC 98019
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638
|||| || | ||||||||||||| ||||||| ||||| ||| | |||||||||||||| |
Sbjct 96922 CTTTGGATAAATCGACTTCTTCGGCAGTCCAGAACGAAGCTACAGCTTTTTTGTACATTT 96863
Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678
||| | || ||||| || || || || || || || ||
Sbjct 96862 TCCACACATCGTGATACTGGATCGGGAAAATCACGAACCG 96823
>seq13244
Length=114396
Score = 127 bits (140), Expect = 2e-24
Identities = 250/362 (69%), Gaps = 11/362 (3%)
Strand=Plus/Plus
Query 93110 AAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168
|||||| |||||| || | || || || || ||||| || || || || | ||| || ||
Sbjct 3492 AAACCT-CGTCTC-TGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCG 3549
Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTA-----CCAGaaaaaaaTATACCTTCCACG 93223
|||||| ||||||||||| || || | | | || ||||| || || ||||| |||
Sbjct 3550 TTTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 3609
Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283
|| || || || | || || ||| | || | || | || | | |||||| | | |
Sbjct 3610 GCCGCGAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGA 3669
Query 93284 GCCCA-ATCGGCTTTTTTCTTAATACAAGGTAGTGT-TTCGATAGCGTTAAATAGGTAAT 93341
||||| | || ||| || | | |||||| | || || || | |||||| | ||||
Sbjct 3670 GCCCACAACGCCTTCTTGCGCAC-ACAAGGCATCGTCTTAAATCGTGTTAAACAAATAAT 3728
Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGA 93401
|| | || || | ||||| |||| || || || ||||| ||||||| ||
Sbjct 3729 TTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGA 3788
Query 93402 CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTT 93461
|||||| || |||||||||||||| || ||| | | ||||||| |||| | ||| ||||
Sbjct 3789 TATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTT 3848
Query 93462 GA 93463
||
Sbjct 3849 GA 3850
>seq12593
Length=225266
Score = 107 bits (118), Expect = 2e-18
Identities = 77/86 (90%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGG-GAGC 126322
||||||| ||||||||||||||||||||||||| |||||||||||| | ||| || | ||
Sbjct 85685 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGTCCTCCTAGGAGGGC 85626
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||| | ||||||
Sbjct 85625 GTGGGTTCGAACCCCACTCTTGACAA 85600
Score = 100 bits (110), Expect = 3e-16
Identities = 78/92 (85%), Gaps = 6/92 (7%)
Strand=Plus/Minus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----G 126317
|| ||||||| ||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 85851 TAGAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGT--CCTCAAATG 85794
Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349
| |||||||||| |||||||| ||||||||
Sbjct 85793 AGGGCGTGGGTTCAAACCCCACTTCTGACAAA 85762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556758205358360
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