Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq12471 152 4e-32 seq13894 111 1e-19 seq12614 86.0 5e-12 >seq12471 Length=105862 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || || |||||||| || || | ||| || || ||||| ||||||||||||||| Sbjct 72141 CCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTC 72200 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || |||||||||||||| |||| | ||||||||||| || ||| Sbjct 72201 AATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGA 72260 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || |||||||| ||||| || | | ||||| |||||| | | ||||| Sbjct 72261 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACT 72320 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| ||||| ||||| ||||| |||||||| Sbjct 72321 TCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 ||||| ||||| | ||| |||||||| ||||||||||||||||| | || ||| |||| Sbjct 72901 AAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCT 72960 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || |||||||| ||||| |||| ||||||||||| || || || || ||||||||||| Sbjct 72961 TCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCT 73020 Query 114291 GCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||||| ||| | | ||| | ||||| | | ||||| |||| || | || Sbjct 73021 TGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTC 73080 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| ||||| || || || ||||| Sbjct 73081 TTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| ||||||||||| ||||||| ||| ||| |||||| | ||||||||| Sbjct 73434 GTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCCAATTGTTTACCG 73493 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | ||||||||| || |||||||| ||||||||||| ||||| ||| Sbjct 73494 GCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGGATCTTGGCTTTC 73553 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | ||||| |||| ||| | ||||| || || || ||| Sbjct 73554 ACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTTCCAGTGAGTGTT 73613 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 73614 TTGACGAAGATCTGCAT 73630 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | | || | || || || | ||| |||||||| || |||||||||||| Sbjct 73111 ATACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCG 73170 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || |||||| | |||||| |||||| | || | ||||||||| |||||| Sbjct 73171 CTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGA 73230 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| ||||| | || | |||||| | | || Sbjct 73231 GGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCA 73290 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| |||||||||||||| Sbjct 73291 ACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || ||||| ||||| |||||||||||||||| |||||| |||||| Sbjct 72614 AACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTC 72673 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| |||||| | || | ||||||||| |||||||| || || ||||| || Sbjct 72674 CAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTG 72733 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | ||| | ||||| | | ||| || || | || | || || Sbjct 72734 GATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTT 72793 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| |||| || || || || || |||||| Sbjct 72794 GCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAA 114227 ||||| || ||||| | || |||||||| || |||||||| ||||| | || || Sbjct 73644 CTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCG 73703 Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||| || || || |||||| | || | |||||||| || |||||||| ||||| || Sbjct 73704 TCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTA 73763 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | || | |||||| | | || || |||| || | Sbjct 73764 TCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAAGTAATA 73823 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| || || || ||||| ||||||||||||||| Sbjct 73824 GTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATG 73859 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | | || | || || || | || |||||||| ||||||||||| ||| Sbjct 72366 ATACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCG 72425 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || ||| || | |||||||| || | || ||||||||||| || || Sbjct 72426 CTTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGT 72485 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || ||||| | || | |||||| | | || Sbjct 72486 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCA 72545 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || |||||||| ||||| |||||||| Sbjct 72546 ACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 >seq13894 Length=1211295 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 || |||||| ||||| | || ||||| || || |||||||||||| || || || Sbjct 231501 TCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCC 231560 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| || || || | || | ||| |||||||| || || ||||||||||| Sbjct 231561 ATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTT 231620 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| || || || | | |||| |||||| | | |||||| || | ||| | Sbjct 231621 GTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAAT 231680 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| | |||||| || ||||||||||| Sbjct 231681 GGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTT-TGAATGTTGTAATC 114211 |||||||| | | | || || | ||| | || ||||| ||| || ||||||||||| Sbjct 231715 ATACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATC 231774 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || || || |||||| ||||||||||| || |||| | |||||| || ||||| Sbjct 231775 TGACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGG 231834 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||||||||||||||| || || || | | ||| | || |||| | ||| Sbjct 231835 AGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTC 231894 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | || | || || || || | |||||| || ||||||||||| Sbjct 231895 GACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||||||| || || || |||||| | ||| || || Sbjct 231977 GTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCC 232036 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | || || || || || || ||||| |||||||| || ||| | || Sbjct 232037 GCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTGGAT-TTTCGCCTT 232095 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | ||||| |||||| | | |||||| |||| || | ||||| || || | || Sbjct 232096 AACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGT 232155 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| |||||||||||||| Sbjct 232156 TTTCACAAAAATCTGCAT 232173 >seq12614 Length=760689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || ||||| || | ||| | ||| || || || |||||||| || ||| Sbjct 131134 ACCACCACGGAGCCTCAACACAAGATGCAACGTCGACTCCTTCTGAATGTTATAGTCGGA 131193 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| ||||||||| ||||| ||||| | || | || ||||| |||||||| Sbjct 131194 CAACGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAATCGTTGTTGATCCGGAGG 131253 Query 114275 AATGCCT 114281 ||| ||| Sbjct 131254 AATTCCT 131260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420058930601268