Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13941 129 1e-24 seq13338 123 5e-23 seq477 105 1e-17 seq13458 102 2e-16 seq13244 84.2 4e-11 >seq13941 Length=98454 Score = 129 bits (142), Expect = 1e-24 Identities = 245/357 (69%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 ||||||| |||||||||| || ||||| | || ||||| |||||||| Sbjct 98025 AGGTTCAGTCAAGAGGTGCAAATGACCGAAGCGCGATTTTTTTACGGATTCCAGATCATG 98084 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || |||||||||||||| || ||||| || |||| |||||||| | ||| | Sbjct 98085 ATCGAGAACGTGCACTCGGAAATGTACAGTCTTTTGATCAATACGTACATTCAGGACTCG 98144 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 | |||| | |||| || || || |||||||| || ||| | ||||||||| Sbjct 98145 ATGAAGCGACATCATTTGTTTAATGCGATCGAGACGATTCCGTGCGTGCGTAAGAAGGCG 98204 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGC 42712 ||||||||| | ||||||| || | ||| || |||||||||||| | | ||||| Sbjct 98205 TTGTGGGCGCTCGATTGGATCGGGA-ACAAGACGGCGACGTTCGGCGAGCGAGTTGTAGC 98263 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || | || || || || || || |||||||| | ||||| || || || ||| | || Sbjct 98264 TTTCGCGGCGGTTGAAGGGATTTTTTTCTCGGGGTCTTTCGCGTCGATTTTTTGGATGAA 98323 Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 | |||| || ||||| ||| | || ||| || ||| | |||||||| || || Sbjct 98324 AAACGAGGTCTC-ATGCCTGGATTGACGTTCAGCAATGAATTGATCAGCAGAGATGA 98379 >seq13338 Length=646138 Score = 123 bits (136), Expect = 5e-23 Identities = 246/359 (69%), Gaps = 4/359 (1%) Strand=Plus/Minus Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||| |||||||| | | || || || | || || || ||||| || || | Sbjct 454377 GGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAAATTGCGA 454318 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | ||||| | || || ||| ||||| | || | || || ||||||| || | Sbjct 454317 TTGAGAATATCCATTCCGAGATGTACAGCCTTTTGATAAATACTTACATCCAAGACACGA 454258 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 | | | ||| ||||||| || || ||||||||||| || | ||||||||| Sbjct 454257 TGAAAAGAAACTATTTGTTCAACGCGATCGAGACGATGCCATGTGTGCGCAAGAAGGCGT 454198 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||| || ||||||||| || | ||| | |||||||||||| | | | || Sbjct 454197 TGTGGGCTCTTGACTGGATCG-GAAACAAAACGGCGACGTTCGGCGAGCGAATCATCGCT 454139 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 ||| | ||||| || ||||||||||| || || | ||||| || || || ||||| ||| Sbjct 454138 TTTGCGGCCGTAGAAGGCATCTTCTTTTCCGGTTCATTCGCGTCAATATTTTGGCTAAAG 454079 Query 42774 CAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | | | ||| |||||||||| | || ||| |||||| | |||||||| ||||||| Sbjct 454078 -AAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGAGACGAGG 454021 >seq477 Length=28440 Score = 105 bits (116), Expect = 1e-17 Identities = 219/321 (68%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572 || || || ||||| || || || ||||| | | |||||| ||||| | || | Sbjct 7501 TTTTATGGATTCCAAATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATA 7442 Query 42573 AACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 || || ||||||| ||| | | | | || ||||||| || || ||||||||| Sbjct 7441 AATACTTACATCCAGGACACGATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATG 7382 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691 || || | ||||||||| ||||| || ||||||||| || | || || || Sbjct 7381 CCTTGTGTGCGCAAGAAGGCGTTGTGGGCTCTTGACTGGATCG-GAAACAAAACGGCGAC 7323 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||||||| | | | || || | ||||| || ||||||||||| || | | || Sbjct 7322 ATTCGGCGAACGAATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATT 7263 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACG 42810 ||| || || || ||||| ||| | | | ||| |||||||||| | || ||| |||| Sbjct 7262 CGCGTCGATATTTTGGCTAAAG-AAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACG 7204 Query 42811 AACTCATCAGCAGGGACGAGG 42831 || | |||||||| ||||||| Sbjct 7203 AATTAATCAGCAGAGACGAGG 7183 >seq13458 Length=7495 Score = 102 bits (112), Expect = 2e-16 Identities = 241/359 (67%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||| |||||||| | | || || || | || || || ||||| || || | Sbjct 2554 GGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAAATTGCGA 2613 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | ||||| | | |||||| ||||| | || | || || ||||||| ||| | Sbjct 2614 TTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCCAGGACACGA 2673 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 | | | || ||||||| || || ||||||||||| || | | ||||||| Sbjct 2674 TGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCGCACGAAGGCGT 2733 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||| || ||||||||| || | || || || ||||||||| | | | || Sbjct 2734 TGTGGGCTCTTGACTGGATCG-GAAACAAAACGGCGACATTCGGCGAGCGAATCATCGCT 2792 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 | | ||||| || ||||||||||| || | | ||||| || || || ||||| ||| Sbjct 2793 TACGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTTTGGCTAAAG 2852 Query 42774 CAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | | | ||| |||||||||| | || ||| |||||| | |||||||| ||||||| Sbjct 2853 -AAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGAGACGAGG 2910 >seq13244 Length=114396 Score = 84.2 bits (92), Expect = 4e-11 Identities = 150/214 (70%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 42625 AGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG 42684 |||||||||| || | ||||||||| ||||| || ||||||||| || | Sbjct 3706 AGACGATGCCTTGTGTGCGCAAGAAGGCGTTGTGGGCTCTTGACTGGATCG-GAAACAAA 3648 Query 42685 ACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCG 42743 ||| | || ||||||||| | | | || || | ||||| || ||||||||||| || Sbjct 3647 ACGGCGACATTCGGCGAGCGAATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCC 3588 Query 42744 GGCGC-----CTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTC 42797 || | | |||| || || || ||||| ||| | | | ||| |||||||||| | Sbjct 3587 GGTTCATTCGCGTCGCGTCGATATTTTGGCTAAAG-AAACGCGGTCTGATGCCCGGATTG 3529 Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || ||| |||||| | |||||||| ||||||| Sbjct 3528 ACGTTCAGTAACGAATTAATCAGCAGAGACGAGG 3495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944165217306640