Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq13941 129 1e-24
seq13338 123 5e-23
seq477 105 1e-17
seq13458 102 2e-16
seq13244 84.2 4e-11
>seq13941
Length=98454
Score = 129 bits (142), Expect = 1e-24
Identities = 245/357 (69%), Gaps = 3/357 (1%)
Strand=Plus/Plus
Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533
||||||| |||||||||| || ||||| | || ||||| ||||||||
Sbjct 98025 AGGTTCAGTCAAGAGGTGCAAATGACCGAAGCGCGATTTTTTTACGGATTCCAGATCATG 98084
Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593
|| |||||||||||||| || ||||| || |||| |||||||| | ||| |
Sbjct 98085 ATCGAGAACGTGCACTCGGAAATGTACAGTCTTTTGATCAATACGTACATTCAGGACTCG 98144
Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653
| |||| | |||| || || || |||||||| || ||| | |||||||||
Sbjct 98145 ATGAAGCGACATCATTTGTTTAATGCGATCGAGACGATTCCGTGCGTGCGTAAGAAGGCG 98204
Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGC 42712
||||||||| | ||||||| || | ||| || |||||||||||| | | |||||
Sbjct 98205 TTGTGGGCGCTCGATTGGATCGGGA-ACAAGACGGCGACGTTCGGCGAGCGAGTTGTAGC 98263
Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772
|| | || || || || || || |||||||| | ||||| || || || ||| | ||
Sbjct 98264 TTTCGCGGCGGTTGAAGGGATTTTTTTCTCGGGGTCTTTCGCGTCGATTTTTTGGATGAA 98323
Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829
| |||| || ||||| ||| | || ||| || ||| | |||||||| || ||
Sbjct 98324 AAACGAGGTCTC-ATGCCTGGATTGACGTTCAGCAATGAATTGATCAGCAGAGATGA 98379
>seq13338
Length=646138
Score = 123 bits (136), Expect = 5e-23
Identities = 246/359 (69%), Gaps = 4/359 (1%)
Strand=Plus/Minus
Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534
|||||| |||||||| | | || || || | || || || ||||| || || |
Sbjct 454377 GGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAAATTGCGA 454318
Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594
| ||||| | || || ||| ||||| | || | || || ||||||| || |
Sbjct 454317 TTGAGAATATCCATTCCGAGATGTACAGCCTTTTGATAAATACTTACATCCAAGACACGA 454258
Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654
| | | ||| ||||||| || || ||||||||||| || | |||||||||
Sbjct 454257 TGAAAAGAAACTATTTGTTCAACGCGATCGAGACGATGCCATGTGTGCGCAAGAAGGCGT 454198
Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCC 42713
||||| || ||||||||| || | ||| | |||||||||||| | | | ||
Sbjct 454197 TGTGGGCTCTTGACTGGATCG-GAAACAAAACGGCGACGTTCGGCGAGCGAATCATCGCT 454139
Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773
||| | ||||| || ||||||||||| || || | ||||| || || || ||||| |||
Sbjct 454138 TTTGCGGCCGTAGAAGGCATCTTCTTTTCCGGTTCATTCGCGTCAATATTTTGGCTAAAG 454079
Query 42774 CAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831
| | | ||| |||||||||| | || ||| |||||| | |||||||| |||||||
Sbjct 454078 -AAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGAGACGAGG 454021
>seq477
Length=28440
Score = 105 bits (116), Expect = 1e-17
Identities = 219/321 (68%), Gaps = 4/321 (1%)
Strand=Plus/Minus
Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572
|| || || ||||| || || || ||||| | | |||||| ||||| | || |
Sbjct 7501 TTTTATGGATTCCAAATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATA 7442
Query 42573 AACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632
|| || ||||||| ||| | | | | || ||||||| || || |||||||||
Sbjct 7441 AATACTTACATCCAGGACACGATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATG 7382
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691
|| || | ||||||||| ||||| || ||||||||| || | || || ||
Sbjct 7381 CCTTGTGTGCGCAAGAAGGCGTTGTGGGCTCTTGACTGGATCG-GAAACAAAACGGCGAC 7323
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||||||| | | | || || | ||||| || ||||||||||| || | | ||
Sbjct 7322 ATTCGGCGAACGAATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATT 7263
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACG 42810
||| || || || ||||| ||| | | | ||| |||||||||| | || ||| ||||
Sbjct 7262 CGCGTCGATATTTTGGCTAAAG-AAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACG 7204
Query 42811 AACTCATCAGCAGGGACGAGG 42831
|| | |||||||| |||||||
Sbjct 7203 AATTAATCAGCAGAGACGAGG 7183
>seq13458
Length=7495
Score = 102 bits (112), Expect = 2e-16
Identities = 241/359 (67%), Gaps = 4/359 (1%)
Strand=Plus/Plus
Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534
|||||| |||||||| | | || || || | || || || ||||| || || |
Sbjct 2554 GGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAAATTGCGA 2613
Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594
| ||||| | | |||||| ||||| | || | || || ||||||| ||| |
Sbjct 2614 TTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCCAGGACACGA 2673
Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654
| | | || ||||||| || || ||||||||||| || | | |||||||
Sbjct 2674 TGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCGCACGAAGGCGT 2733
Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCC 42713
||||| || ||||||||| || | || || || ||||||||| | | | ||
Sbjct 2734 TGTGGGCTCTTGACTGGATCG-GAAACAAAACGGCGACATTCGGCGAGCGAATCATCGCT 2792
Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773
| | ||||| || ||||||||||| || | | ||||| || || || ||||| |||
Sbjct 2793 TACGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTTTGGCTAAAG 2852
Query 42774 CAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831
| | | ||| |||||||||| | || ||| |||||| | |||||||| |||||||
Sbjct 2853 -AAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGAGACGAGG 2910
>seq13244
Length=114396
Score = 84.2 bits (92), Expect = 4e-11
Identities = 150/214 (70%), Gaps = 9/214 (4%)
Strand=Plus/Minus
Query 42625 AGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG 42684
|||||||||| || | ||||||||| ||||| || ||||||||| || |
Sbjct 3706 AGACGATGCCTTGTGTGCGCAAGAAGGCGTTGTGGGCTCTTGACTGGATCG-GAAACAAA 3648
Query 42685 ACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCG 42743
||| | || ||||||||| | | | || || | ||||| || ||||||||||| ||
Sbjct 3647 ACGGCGACATTCGGCGAGCGAATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCC 3588
Query 42744 GGCGC-----CTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTC 42797
|| | | |||| || || || ||||| ||| | | | ||| |||||||||| |
Sbjct 3587 GGTTCATTCGCGTCGCGTCGATATTTTGGCTAAAG-AAACGCGGTCTGATGCCCGGATTG 3529
Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831
|| ||| |||||| | |||||||| |||||||
Sbjct 3528 ACGTTCAGTAACGAATTAATCAGCAGAGACGAGG 3495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944165217306640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |