Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13894 109 4e-19 seq11852 87.8 1e-12 seq4123 87.8 1e-12 seq4003 87.8 1e-12 >seq13894 Length=1211295 Score = 109 bits (120), Expect = 4e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTT-CTGAATGTTGTAATCTG 33958 ||| ||||||| |||||||| |||||||| || ||||| ||| ||||||||||||| Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | || |||| ||| || |||||||| |||| |||||||||||| | Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | || |||||||| ||||| ||| | | | |||| | || |||| Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | ||| || || || || |||| |||||||| || || |||||| Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| | |||| ||||||||||| || |||||||| |||||||| || | Sbjct 232174 ACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGA 232233 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | || |||||||||||||| ||||| || | || ||||||||| || Sbjct 232234 TAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGG 232293 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGC 34078 | | ||||| ||| ||||| ||| | | ||| | |||| | || ||| Sbjct 232294 GATACCTTCTTTATCCTGGATTTTCGCCTTCA-CGTTTTCAATCGTATCGGAAGGCTCGA 232352 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 ||||| ||||| || || ||||||| ||||||||||| || |||||||| Sbjct 232353 CTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| ||||| || |||||||| || ||| ||||| ||||||||||| | | Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || ||||||||||| || || || |||| || |||||||| || Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||||| ||||| | | | || | | |||| | Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || |||||||| |||| ||||||||||| || ||||| Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| |||| |||| ||| || || |||||||| ||||||||||| | | Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || ||||||||||| || ||||| || | || || || || || Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | || ||||||||| ||||| || || | || || | || | | |||| Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCCT---TGACATTCTCAATGGTGTCCGATGGTTCG 231666 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || || |||||||||| |||||||| || || ||||| Sbjct 231667 ACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 >seq11852 Length=1138 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||| Sbjct 443 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 502 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||||| || ||||||||||| ||| || Sbjct 503 CATAACTGATTTAATGAGCCATTCGCGGTTTC 534 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||| Sbjct 443 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 502 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||||| || ||||||||||| ||| || Sbjct 503 CATAACTGATTTAATGAGCCATTCGCGGTTTC 534 >seq4123 Length=1204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||| Sbjct 1027 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 1086 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||||| || ||||||||||| ||| || Sbjct 1087 CATAACTGATTTAATGAGCCATTCGCGGTTTC 1118 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||| Sbjct 1027 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 1086 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||||| || ||||||||||| ||| || Sbjct 1087 CATAACTGATTTAATGAGCCATTCGCGGTTTC 1118 >seq4003 Length=1017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||| Sbjct 120 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 61 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||||| || ||||||||||| ||| || Sbjct 60 CATAACTGATTTAATGAGCCATTCGCGGTTTC 29 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||| Sbjct 120 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 61 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||||| || ||||||||||| ||| || Sbjct 60 CATAACTGATTTAATGAGCCATTCGCGGTTTC 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396991075060678