Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 109 4e-19
seq11852 87.8 1e-12
seq4123 87.8 1e-12
seq4003 87.8 1e-12
>seq13894
Length=1211295
Score = 109 bits (120), Expect = 4e-19
Identities = 163/230 (71%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTT-CTGAATGTTGTAATCTG 33958
||| ||||||| |||||||| |||||||| || ||||| ||| |||||||||||||
Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776
Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
||| ||| | || |||| ||| || |||||||| |||| |||||||||||| |
Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078
| | || |||||||| ||||| ||| | | | |||| | || ||||
Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896
Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
||| | ||| || || || || |||| |||||||| || || ||||||
Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 105 bits (116), Expect = 5e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| ||||| | |||| ||||||||||| || |||||||| |||||||| || |
Sbjct 232174 ACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGA 232233
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| | || |||||||||||||| ||||| || | || ||||||||| ||
Sbjct 232234 TAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGG 232293
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGC 34078
| | ||||| ||| ||||| ||| | | ||| | |||| | || |||
Sbjct 232294 GATACCTTCTTTATCCTGGATTTTCGCCTTCA-CGTTTTCAATCGTATCGGAAGGCTCGA 232352
Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130
||||| ||||| || || ||||||| ||||||||||| || ||||||||
Sbjct 232353 CTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| ||||||| ||||| || |||||||| || ||| ||||| ||||||||||| | |
Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || | || ||||||||||| || || || |||| || |||||||| ||
Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080
| || ||||||||| ||||| ||||| | | | || | | |||| |
Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126
Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | || || |||||||| |||| ||||||||||| || |||||
Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| ||||||| |||| |||| ||| || || |||||||| ||||||||||| | |
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| ||| | || ||||||||||| || ||||| || | || || || || ||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077
| || ||||||||| ||||| || || | || || | || | | ||||
Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCCT---TGACATTCTCAATGGTGTCCGATGGTTCG 231666
Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||||| || || || |||||||||| |||||||| || || |||||
Sbjct 231667 ACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
>seq11852
Length=1138
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/92 (84%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390
|||||||| ||||||||||| |||| |||||||||||| | || ||||||||||||
Sbjct 443 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 502
Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422
|| ||||||| || ||||||||||| ||| ||
Sbjct 503 CATAACTGATTTAATGAGCCATTCGCGGTTTC 534
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/92 (84%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587
|||||||| ||||||||||| |||| |||||||||||| | || ||||||||||||
Sbjct 443 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 502
Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619
|| ||||||| || ||||||||||| ||| ||
Sbjct 503 CATAACTGATTTAATGAGCCATTCGCGGTTTC 534
>seq4123
Length=1204
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/92 (84%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390
|||||||| ||||||||||| |||| |||||||||||| | || ||||||||||||
Sbjct 1027 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 1086
Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422
|| ||||||| || ||||||||||| ||| ||
Sbjct 1087 CATAACTGATTTAATGAGCCATTCGCGGTTTC 1118
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/92 (84%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587
|||||||| ||||||||||| |||| |||||||||||| | || ||||||||||||
Sbjct 1027 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 1086
Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619
|| ||||||| || ||||||||||| ||| ||
Sbjct 1087 CATAACTGATTTAATGAGCCATTCGCGGTTTC 1118
>seq4003
Length=1017
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/92 (84%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587
|||||||| ||||||||||| |||| |||||||||||| | || ||||||||||||
Sbjct 120 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 61
Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619
|| ||||||| || ||||||||||| ||| ||
Sbjct 60 CATAACTGATTTAATGAGCCATTCGCGGTTTC 29
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/92 (84%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390
|||||||| ||||||||||| |||| |||||||||||| | || ||||||||||||
Sbjct 120 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTTTTACGATCTAAGGAAC 61
Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422
|| ||||||| || ||||||||||| ||| ||
Sbjct 60 CATAACTGATTTAATGAGCCATTCGCGGTTTC 29
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396991075060678
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