Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 145 2e-29
seq13894 143 6e-29
seq12177 89.7 1e-12
>seq12471
Length=105862
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330
|||| ||| |||||| ||||| || || ||| ||| |||||||| ||||| ||||||
Sbjct 73138 TGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGT 73197
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
||||| ||||| |||| |||||||||| || || |||||||| || || || ||
Sbjct 73198 TTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTG 73257
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || || || |||| ||||| | || ||||||||||| || || || || ||
Sbjct 73258 GCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTG 73317
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| || ||||||||
Sbjct 73318 AGGGTTTTGACAAAAATCTGCAT 73340
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329
||||| ||| |||||| || || || || ||| || ||||| || ||||| | |||
Sbjct 72909 ATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCGAGTTG 72968
Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389
||| || || ||||| |||||||||||| |||||| |||||||| || ||||| ||
Sbjct 72969 TTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGATCTT 73028
Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
||||| || ||||| |||| || || | || ||||| | |||||| ||||| || ||
Sbjct 73029 GGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCAGT 73088
Query 288450 CAGAGTCTTGACGAATATCTGCAT 288473
||| || |||||||| || |||||
Sbjct 73089 CAGGGTTTTGACGAAGATTTGCAT 73112
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330
|||| ||| |||||| || || || |||||| | ||||| || || || || |||
Sbjct 72393 TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCCAACTGT 72452
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || ||||||||||||||| |||||||||||| ||||| || |||||
Sbjct 72453 TTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTA 72512
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || || || || | ||||| | || |||||||| || || ||||| || ||
Sbjct 72513 GCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTA 72572
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| || ||||||||
Sbjct 72573 AGAGTTTTGACAAAGATCTGCAT 72595
Score = 125 bits (138), Expect = 2e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || || ||| | || || || ||||| ||||||||||| |||||
Sbjct 72632 TTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAA 72691
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| |||||||||| ||||| || |||||||| ||||| || ||||| || ||
Sbjct 72692 AATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATT 72751
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | || || | ||| || || | ||||| ||||| || |||| ||||| ||
Sbjct 72752 TTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAAC 72811
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 72812 GAAGATTTGCAT 72823
>seq13894
Length=1211295
Score = 143 bits (158), Expect = 6e-29
Identities = 161/214 (75%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 288262 AGTACGAGATGAATCGT-GCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320
|| || ||||||| || | || |||| ||||| || || || | | || || || ||
Sbjct 231733 AGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATC 231792
Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380
||| | |||||| || || ||||||| |||||| ||| || || |||||||| ||
Sbjct 231793 TTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTC 231852
Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440
||||||||||| ||||||||||| || | |||| | ||| ||||| |||||||| ||
Sbjct 231853 TTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGT 231912
Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|||||| || | ||| || ||||| |||||||||
Sbjct 231913 CTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 132 bits (146), Expect = 1e-25
Identities = 156/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323
||| ||||||| || ||| || ||||| || ||||||| | || || || |||||
Sbjct 232192 TACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTC 232251
Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383
||||| || || || || || | || || ||| |||||| ||||||||||||||
Sbjct 232252 CAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTG 232311
Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443
||||||||| ||||||||||| || | |||| | || |||||||| || || |||||
Sbjct 232312 GATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTT 232371
Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| | || || || || |||||||||
Sbjct 232372 ACCGGTTAAGGTTTTCACAAAAATCTGCATT 232402
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || || |||| | || || || ||||| ||||| ||||| || ||
Sbjct 231525 TTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAA 231584
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| | ||| ||||| |||||| |||||||| |||||||||||||| || || ||
Sbjct 231585 AATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATT 231644
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || | ||| |||||||| || || ||||| ||||| | ||| || ||
Sbjct 231645 CTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCAC 231704
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 231705 GAAAATCTGCAT 231716
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
||||| ||||||| || ||||| ||||| || || |||| | || || || |||
Sbjct 231962 AGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCT 232021
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| ||||| ||||| |||||||||| || || ||| |||||| || ||||| ||
Sbjct 232022 TCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCT 232081
Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441
||||||||||| || |||||||| || | || | ||| ||||| | ||||| ||
Sbjct 232082 TGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTT 232141
Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || || || ||||||||
Sbjct 232142 TTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
>seq12177
Length=61224
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
|||||||| || || ||||| |||||||| ||||| |||| ||| || ||| |||||
Sbjct 22486 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCCGACGGTTCAACTTCC 22427
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
| || || || || || || || ||||||||||| |||||||||||
Sbjct 22426 AAAGTAATGGTTTTACCCGTAAGTGTCTTGACGAAGATCTGCATTAT 22380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179431630008042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |