Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12471 145 2e-29 seq13894 143 6e-29 seq12177 89.7 1e-12 >seq12471 Length=105862 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| |||||| ||||| || || ||| ||| |||||||| ||||| |||||| Sbjct 73138 TGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGT 73197 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 ||||| ||||| |||| |||||||||| || || |||||||| || || || || Sbjct 73198 TTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTG 73257 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || |||| ||||| | || ||||||||||| || || || || || Sbjct 73258 GCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTG 73317 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || |||||||| Sbjct 73318 AGGGTTTTGACAAAAATCTGCAT 73340 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||| |||||| || || || || ||| || ||||| || ||||| | ||| Sbjct 72909 ATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCGAGTTG 72968 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || || ||||| |||||||||||| |||||| |||||||| || ||||| || Sbjct 72969 TTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGATCTT 73028 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||||| || ||||| |||| || || | || ||||| | |||||| ||||| || || Sbjct 73029 GGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCAGT 73088 Query 288450 CAGAGTCTTGACGAATATCTGCAT 288473 ||| || |||||||| || ||||| Sbjct 73089 CAGGGTTTTGACGAAGATTTGCAT 73112 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| |||||| || || || |||||| | ||||| || || || || ||| Sbjct 72393 TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCCAACTGT 72452 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || ||||||||||||||| |||||||||||| ||||| || ||||| Sbjct 72453 TTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTA 72512 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | ||||| | || |||||||| || || ||||| || || Sbjct 72513 GCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTA 72572 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || |||||||| Sbjct 72573 AGAGTTTTGACAAAGATCTGCAT 72595 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || ||| | || || || ||||| ||||||||||| ||||| Sbjct 72632 TTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAA 72691 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||||||| ||||| || |||||||| ||||| || ||||| || || Sbjct 72692 AATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATT 72751 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || || | ||| || || | ||||| ||||| || |||| ||||| || Sbjct 72752 TTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAAC 72811 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 72812 GAAGATTTGCAT 72823 >seq13894 Length=1211295 Score = 143 bits (158), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGT-GCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 || || ||||||| || | || |||| ||||| || || || | | || || || || Sbjct 231733 AGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATC 231792 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| | |||||| || || ||||||| |||||| ||| || || |||||||| || Sbjct 231793 TTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTC 231852 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||||||||||| ||||||||||| || | |||| | ||| ||||| |||||||| || Sbjct 231853 TTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGT 231912 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| || | ||| || ||||| ||||||||| Sbjct 231913 CTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||| ||||||| || ||| || ||||| || ||||||| | || || || ||||| Sbjct 232192 TACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTC 232251 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383 ||||| || || || || || | || || ||| |||||| |||||||||||||| Sbjct 232252 CAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTG 232311 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 ||||||||| ||||||||||| || | |||| | || |||||||| || || ||||| Sbjct 232312 GATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTT 232371 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || || || ||||||||| Sbjct 232372 ACCGGTTAAGGTTTTCACAAAAATCTGCATT 232402 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || |||| | || || || ||||| ||||| ||||| || || Sbjct 231525 TTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAA 231584 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | ||| ||||| |||||| |||||||| |||||||||||||| || || || Sbjct 231585 AATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATT 231644 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | ||| |||||||| || || ||||| ||||| | ||| || || Sbjct 231645 CTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCAC 231704 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 231705 GAAAATCTGCAT 231716 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||||| || ||||| ||||| || || |||| | || || || ||| Sbjct 231962 AGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCT 232021 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || ||||| ||||| |||||||||| || || ||| |||||| || ||||| || Sbjct 232022 TCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCT 232081 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||||||||| || |||||||| || | || | ||| ||||| | ||||| || Sbjct 232082 TGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTT 232141 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || || || |||||||| Sbjct 232142 TTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 >seq12177 Length=61224 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || || ||||| |||||||| ||||| |||| ||| || ||| ||||| Sbjct 22486 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCCGACGGTTCAACTTCC 22427 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 | || || || || || || || ||||||||||| ||||||||||| Sbjct 22426 AAAGTAATGGTTTTACCCGTAAGTGTCTTGACGAAGATCTGCATTAT 22380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179431630008042