Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq13641 105 7e-18
seq14070 96.9 4e-15
seq13912 96.9 4e-15
seq13653 96.9 4e-15
seq12471 93.3 5e-14
seq7566 93.3 5e-14
seq14290 87.8 2e-12
seq4438 87.8 2e-12
seq4332 87.8 2e-12
>seq13641
Length=1019812
Score = 105 bits (116), Expect = 7e-18
Identities = 76/87 (87%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 56995 ATGAAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052
|| ||||||| |||||| || || | ||||||||||||||||||||||||||||||||
Sbjct 599180 ATTAAAAATTAATTCTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGG 599239
Query 57053 CATACTCACCACTATACTACCGAGGAT 57079
||||| |||||||||||| |||||||
Sbjct 599240 GATACTAACCACTATACTATCGAGGAT 599266
Score = 89.7 bits (98), Expect = 6e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 583755 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 583696
Query 57065 TATACTACCGAGGA 57078
||||||| ||||||
Sbjct 583695 TATACTATCGAGGA 583682
Score = 89.7 bits (98), Expect = 6e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059
|||| | |||| || | | |||||||||| ||||||||||||||||||||| |||||
Sbjct 584644 AAATATACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 584703
Query 57060 ACCACTATACTACCGAGGA 57078
|||||||||||| ||||||
Sbjct 584704 ACCACTATACTATCGAGGA 584722
>seq14070
Length=708083
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | ||||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 296663 AAAAAGTGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 296604
Query 57058 TCACCACTATACTACCGAGGATT 57080
| |||||||||||| ||||||||
Sbjct 296603 TAACCACTATACTATCGAGGATT 296581
>seq13912
Length=681751
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||||||| |||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 391907 AAAAATTTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 391966
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||| ||||||
Sbjct 391967 TAACCACTATACTATCGAGGA 391987
>seq13653
Length=227863
Score = 96.9 bits (106), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || || | |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 167520 CTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 167579
Query 57067 TACTACCGAGGAT-TGAA 57083
||||| ||||||| ||||
Sbjct 167580 TACTATCGAGGATATGAA 167597
>seq12471
Length=105862
Score = 93.3 bits (102), Expect = 5e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||||| || | ||| ||||||||||| || || || || || ||||| ||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || |||| || |||||||| |||||||| || | |||||| || |||| ||
Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||||| ||| ||| | || | || | || | | ||||||||| | |||||
Sbjct 73752 ATTCCTTCCTTATCC-TGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | || || ||||| || || || || || ||||| || |||||
Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || || | |||||||||| ||| |||||||| || ||||||||
Sbjct 72596 ACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCT 72655
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || | || || | || || |||||||| || | ||||| || || | ||
Sbjct 72656 CAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 72715
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||| || || ||| || ||||| | | | |||||| || | ||| ||
Sbjct 72716 GATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAAC 72775
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||| ||||| || | ||||| || |||||||||||
Sbjct 72776 CTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
>seq7566
Length=248414
Score = 93.3 bits (102), Expect = 5e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||||| |||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 99384 AAAAATTGCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 99443
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||| ||||||
Sbjct 99444 TAACCACTATACTATCGAGGA 99464
>seq14290
Length=91518
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 30592 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 30651
Query 57067 TACTACCGAGGA-TTGAA 57083
||||| |||||| |||||
Sbjct 30652 TACTATCGAGGACTTGAA 30669
>seq4438
Length=69196
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 12558 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 12617
Query 57067 TACTACCGAGGA-TTGAA 57083
||||| |||||| |||||
Sbjct 12618 TACTATCGAGGACTTGAA 12635
>seq4332
Length=215406
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 174334 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 174275
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 174274 ATACTATCGAGGA 174262
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 174942 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 174883
Query 57065 TATACTACCGAGGA 57078
||||||| ||||||
Sbjct 174882 TATACTATCGAGGA 174869
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 174657 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 174598
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 174597 ATACTATCGAGGA 174585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543112719831760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |