Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 145 8e-30
seq12471 123 2e-23
seq13827 86.0 6e-12
>seq13894
Length=1211295
Score = 145 bits (160), Expect = 8e-30
Identities = 171/230 (74%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTT-TGAATGTTGTAATCTG 64274
|||||| | ||| | ||||| ||||||| |||||||| ||| || |||||||||||||
Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776
Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334
| ||| || | ||||| || || || |||||| | || | |||||||| || ||||
Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836
Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394
|||| |||||||| ||||| ||||| ||| || || | |||||| | || |
Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||| | || | |||||| || || |||||||| |||||||| ||||||
Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|||||||| || || ||||||||||| | | ||| || | ||||| | ||||| ||
Sbjct 231520 GTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCC 231579
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| |||| | || || |||||||| || || |||||||| || || ||||| |||
Sbjct 231580 GCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTG 231639
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || || | || ||||| | || | |||||| ||||| ||||||
Sbjct 231640 ACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTT 231699
Query 64427 TTTACGAAAATTTGCAT 64443
|| |||||||| |||||
Sbjct 231700 TTCACGAAAATCTGCAT 231716
>seq12471
Length=105862
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| | ||| || ||||| | |||| || |||||||| ||||||||||| ||
Sbjct 72368 ACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCT 72427
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | || || | ||| || |||||| |||| || ||||| || ||||| ||
Sbjct 72428 TAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||||| || ||||| ||||| |||||| ||| | || || | | || ||
Sbjct 72488 GATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||| | |||||| || || | |||||| || || || |||||
Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 118 bits (130), Expect = 1e-21
Identities = 153/206 (74%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTCTTCAAGCT 64298
||||| ||| |||||||| |||||||||||||| || | | ||||| | ||||| || |
Sbjct 72909 ATGAAGCGTTGATTCTTTCTGAATGTTGTAATC-GCTAAGTGTGCGACCATCTTCGAGTT 72967
Query 64299 GCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTT 64358
| || || ||| | || || ||||| || || || || || |||||||| ||||| | |
Sbjct 72968 GTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGA-TC 73026
Query 64359 TTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417
|| ||||| ||| || | || |||| | || ||||| | || | |||||||||
Sbjct 73027 TTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCA 73086
Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| ||||| ||||| ||||||||
Sbjct 73087 GTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| | ||| || ||||| | |||| |||||||||||| || |||||||||||
Sbjct 73113 ACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCT 73172
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| | ||||| | || || || || |||| | ||||| || || |||||
Sbjct 73173 GAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 73232
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| |||||||| ||||| || || |||||| ||| | || || | | || ||
Sbjct 73233 AATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAAC 73292
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | || | || || || || | ||||| || ||||| |||||
Sbjct 73293 TTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || ||||| || | || | ||| | ||||||||||| || |||||||| || ||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC-GCT 73690
Query 64277 ACG-GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| | ||||| ||||||| |||||||| || || |||| | ||||| || ||||||||
Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||||||| || || || || || ||| || ||| | || || | | |||||
Sbjct 73751 AATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || || || || | ||||| || ||||| |||||
Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
Score = 100 bits (110), Expect = 3e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| || |||||||| ||||||||||| || | ||||| | |||
Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | || || ||||| | || | ||||| || || |||||||| |||||||| |||
Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| ||| | ||||||| | || ||||| | || | |||
Sbjct 73539 TGGA-TCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGT 73597
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| || || | ||||| ||||| || ||||||
Sbjct 73598 TTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305
||| || || ||||| ||||||||||| | ||||| | || || || || || ||
Sbjct 72170 CGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGTTGTTTACC 72229
Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365
||| | || | ||||| |||||||| |||||||| ||||| ||||| || || |||
Sbjct 72230 AGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTCTTGGATCTTAGCCTT 72289
Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| || | || |||| | || ||||| | || | ||||||||| |||| ||
Sbjct 72290 GACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGTCTTGCCAGTCAGGGT 72349
Query 64426 TTTTACGAAAATTTGCAT 64443
||| || || || |||||
Sbjct 72350 TTTGACAAAGATCTGCAT 72367
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | ||| | || || | ||| | || ||||| ||||| |||||||||||
Sbjct 72596 ACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCT 72655
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | ||||| | || || || || |||| | ||||| || || |||||
Sbjct 72656 CAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 72715
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
|| || ||||| ||||| | | || ||||| ||| || | || |||| | || |
Sbjct 72716 GATCCCCTCTTTATCTTGGA-TCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAA 72774
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| |||| ||| | ||||||||| ||||| || || ||||| ||||||||
Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
>seq13827
Length=723868
Score = 86.0 bits (94), Expect = 6e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 154274 GTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGT 154333
||||||||||| || ||||| ||||| || ||||| ||||| | || || | |||
Sbjct 455308 GTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAACGCGCCGTAATACATGGT 455249
Query 154334 TTCGGCAATTTGTTTGTTTAACATTTTG-GCTTTGTCACTTTCGTACGGCAATCCCAATA 154392
|||| ||||| |||||||| || ||| |||| ||||| ||| |||| || | || ||
Sbjct 455248 TTCGAAAATTTTCTTGTTTAA-ATCTTGAGCTTCTTCACTGTCGAACGGAAACCTCATTA 455190
Query 154393 TACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCG 154452
| ||| || ||||| | ||||| | || | ||| | || | |||| | |||||
Sbjct 455189 AAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGGACGGTGTCGTTTATTCG 455130
Query 154453 ATTCTT 154458
|| |||
Sbjct 455129 ATACTT 455124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499552746691160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |