Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq13894 145 8e-30 seq12471 123 2e-23 seq13827 86.0 6e-12 >seq13894 Length=1211295 Score = 145 bits (160), Expect = 8e-30 Identities = 171/230 (74%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTT-TGAATGTTGTAATCTG 64274 |||||| | ||| | ||||| ||||||| |||||||| ||| || ||||||||||||| Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| || | ||||| || || || |||||| | || | |||||||| || |||| Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| |||||||| ||||| ||||| ||| || || | |||||| | || | Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| | || | |||||| || || |||||||| |||||||| |||||| Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| || || ||||||||||| | | ||| || | ||||| | ||||| || Sbjct 231520 GTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCC 231579 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || || |||||||| || || |||||||| || || ||||| ||| Sbjct 231580 GCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTG 231639 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| | || | |||||| ||||| |||||| Sbjct 231640 ACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTT 231699 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 231700 TTCACGAAAATCTGCAT 231716 >seq12471 Length=105862 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | ||| || ||||| | |||| || |||||||| ||||||||||| || Sbjct 72368 ACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCT 72427 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||| || |||||| |||| || ||||| || ||||| || Sbjct 72428 TAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || ||||| ||||| |||||| ||| | || || | | || || Sbjct 72488 GATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | |||||| || || | |||||| || || || ||||| Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 118 bits (130), Expect = 1e-21 Identities = 153/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTCTTCAAGCT 64298 ||||| ||| |||||||| |||||||||||||| || | | ||||| | ||||| || | Sbjct 72909 ATGAAGCGTTGATTCTTTCTGAATGTTGTAATC-GCTAAGTGTGCGACCATCTTCGAGTT 72967 Query 64299 GCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTT 64358 | || || ||| | || || ||||| || || || || || |||||||| ||||| | | Sbjct 72968 GTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGA-TC 73026 Query 64359 TTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||| ||| || | || |||| | || ||||| | || | ||||||||| Sbjct 73027 TTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCA 73086 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||||| ||||| |||||||| Sbjct 73087 GTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | ||| || ||||| | |||| |||||||||||| || ||||||||||| Sbjct 73113 ACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCT 73172 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | ||||| | || || || || |||| | ||||| || || ||||| Sbjct 73173 GAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 73232 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| || || |||||| ||| | || || | | || || Sbjct 73233 AATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAAC 73292 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || || || || | ||||| || ||||| ||||| Sbjct 73293 TTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| || | || | ||| | ||||||||||| || |||||||| || || Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC-GCT 73690 Query 64277 ACG-GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | | ||||| ||||||| |||||||| || || |||| | ||||| || |||||||| Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||| || ||| | || || | | ||||| Sbjct 73751 AATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || || || || | ||||| || ||||| ||||| Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || |||||||| ||||||||||| || | ||||| | ||| Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || ||||| | || | ||||| || || |||||||| |||||||| ||| Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | ||||||| | || ||||| | || | ||| Sbjct 73539 TGGA-TCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGT 73597 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||||| ||||| || |||||| Sbjct 73598 TTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| || || ||||| ||||||||||| | ||||| | || || || || || || Sbjct 72170 CGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGTTGTTTACC 72229 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || | ||||| |||||||| |||||||| ||||| ||||| || || ||| Sbjct 72230 AGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTCTTGGATCTTAGCCTT 72289 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || |||| | || ||||| | || | ||||||||| |||| || Sbjct 72290 GACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGTCTTGCCAGTCAGGGT 72349 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || || || ||||| Sbjct 72350 TTTGACAAAGATCTGCAT 72367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | || || | ||| | || ||||| ||||| ||||||||||| Sbjct 72596 ACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCT 72655 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || || || || |||| | ||||| || || ||||| Sbjct 72656 CAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 72715 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || || ||||| ||||| | | || ||||| ||| || | || |||| | || | Sbjct 72716 GATCCCCTCTTTATCTTGGA-TCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAA 72774 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||| ||| | ||||||||| ||||| || || ||||| |||||||| Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 >seq13827 Length=723868 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 154274 GTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGT 154333 ||||||||||| || ||||| ||||| || ||||| ||||| | || || | ||| Sbjct 455308 GTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAACGCGCCGTAATACATGGT 455249 Query 154334 TTCGGCAATTTGTTTGTTTAACATTTTG-GCTTTGTCACTTTCGTACGGCAATCCCAATA 154392 |||| ||||| |||||||| || ||| |||| ||||| ||| |||| || | || || Sbjct 455248 TTCGAAAATTTTCTTGTTTAA-ATCTTGAGCTTCTTCACTGTCGAACGGAAACCTCATTA 455190 Query 154393 TACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCG 154452 | ||| || ||||| | ||||| | || | ||| | || | |||| | ||||| Sbjct 455189 AAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGGACGGTGTCGTTTATTCG 455130 Query 154453 ATTCTT 154458 || ||| Sbjct 455129 ATACTT 455124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499552746691160