Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13894 136 4e-27 seq12471 132 4e-26 seq7061 104 2e-17 seq13827 95.1 1e-14 >seq13894 Length=1211295 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| || ||||| || || |||||||| ||||| || || ||| | |||| ||| Sbjct 232189 CAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATC 232248 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||||||| || || || | || ||||||||||| ||||| || || ||||||||||| Sbjct 232249 TTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATC 232308 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || ||||| || | ||| | || ||||||| ||||||||||||||| | || Sbjct 232309 CTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGT 232368 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| ||||| |||||||| ||||| Sbjct 232369 CTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| || | |||||| || |||||||| ||||| || |||||| | |||| ||| Sbjct 231504 CAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATC 231563 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||||||| ||||| || | || || ||||| ||||| || || ||||||||||| || Sbjct 231564 TTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTC 231623 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || ||||| |||| || | |||||| || | ||||||||||| |||| || Sbjct 231624 CTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGT 231683 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| |||||| || ||||| ||||| Sbjct 231684 CTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||| || || ||||| || |||||| | ||| ||| ||| Sbjct 231965 ACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCTTCC 232024 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| ||||| ||| | |||||||||||||| || || || ||||| ||||| ||||| Sbjct 232025 AATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTGG 232084 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | ||| | |||||| || | |||||||| | ||| | ||||| Sbjct 232085 ATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTT 232144 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| ||||| |||||||| ||||| Sbjct 232145 CCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Score = 123 bits (136), Expect = 2e-23 Identities = 159/216 (74%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTT-TGGATATTATAATCGCTGAC--GGTTTTAGA 45184 || ||| ||||| || || ||||||||| ||||| || ||||| |||| |||| Sbjct 231732 CAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATC--TGACAAGGTTCGGCC 231789 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| |||||| || || | ||||| || ||||| ||||| |||||||||||||| Sbjct 231790 ATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTT 231849 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| ||||| || | ||| | || ||||||| |||||||| || || | Sbjct 231850 GTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGAT 231909 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| |||||| || ||||| ||||| Sbjct 231910 GGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 >seq12471 Length=105862 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||| | ||| | || ||||| ||||| || ||||| || |||||||||| || Sbjct 73125 CCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCC 73184 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||||||||||||| ||| | ||||| || || || ||||| ||||| |||||||| Sbjct 73185 ATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTT 73244 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || ||| | || | |||||| | ||| |||||||| |||| Sbjct 73245 GTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAAT 73304 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| |||||||| ||||| Sbjct 73305 AGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| |||||||| || | || ||||| || ||||||||||| || |||||||| Sbjct 72141 CCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTC 72200 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | |||||| || || | |||||||| || ||||| |||||| Sbjct 72201 AATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGA 72260 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||| ||||| || || |||| ||| | |||||| | ||||||| Sbjct 72261 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACT 72320 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || ||||| || || ||||| ||||| || ||||| Sbjct 72321 TCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || |||||||||||||| || |||||||| | || | ||| |||||||| Sbjct 72620 ATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCCAATTG 72679 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | ||||| || || || ||||| || || || ||||||||||| || || Sbjct 72680 TTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTT 72739 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| ||| | ||||| || || || || | ||| | || ||||| || Sbjct 72740 GGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGT 72799 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || |||||||| Sbjct 72800 CAAGGTCTTAACGAAGATTTGCAT 72823 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||| | ||| | || || || ||||| || || || || || ||||| | || Sbjct 72380 CCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCC 72439 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| ||||| || || | |||| || || || || || || || ||||| || Sbjct 72440 ATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTT 72499 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| ||| | || | |||||| | ||| ||||||||||||| Sbjct 72500 ATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAAT 72559 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || |||||||| ||||| || ||||| Sbjct 72560 GGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| || || || || || ||||| | || | ||| ||||||||| Sbjct 73428 TGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCCAATTGT 73487 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || || || || || ||||| |||||||| ||||| || || Sbjct 73488 TTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGGATCTTG 73547 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||| || | ||||||||| | |||| ||||| || || Sbjct 73548 GCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTTCCAGTG 73607 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || ||||| Sbjct 73608 AGTGTTTTGACGAAGATCTGCAT 73630 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || || | ||| ||||||||||| || || || || |||||||| | || | ||| Sbjct 72901 AAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCT 72960 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | |||||| || || | || | || || || || || || || |||||||| ||| Sbjct 72961 TCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCT 73020 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || ||||| ||| | ||||| || ||||||||| | || | || Sbjct 73021 TGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTC 73080 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| || || |||||||| Sbjct 73081 TTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 >seq7061 Length=6671 Score = 104 bits (114), Expect = 2e-17 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 || ||||| || ||||| | || || |||| ||| | || ||| || || ||||| Sbjct 2999 TTTTTTTAAACCACCGCGTAATCTTAATACTAAATGTAAAGTGTTTTCTTTCTGTATATT 2940 Query 45164 ATAATCGCTGA--CGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 ||||| || || |||| ||| || || ||||| || || | || |||| |||| Sbjct 2939 GTAATCTTCGAGACGTTTTTC--ATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGC 2882 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 |||||||| | || ||||||||||||||||| |||| |||||| || | ||| || Sbjct 2881 TGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTTGATATATTTGATGGTATCC 2822 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 ||| |||| || | || | | ||| || |||| |||||| ||||| || |||| Sbjct 2821 GAATGCTCGCAATCTATCGTTATGGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764 >seq13827 Length=723868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 123899 ACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCAT 123958 |||| | || ||||| | || | ||||| ||||||||||||||| | | || | | Sbjct 455140 ACACCGTCCTATCGGAATTGGGGTGCAAGGATTGGCCGACGCGTTTCTTTTAATGAGGTT 455199 Query 123959 GCCGTACGAAAGCGACGAAGC-AAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATT 124017 |||| ||| || || ||||| ||| | | || | | |||| |||||| || |||| Sbjct 455200 TCCGTTCGACAGTGAAGAAGCTCAAGAT-TTAAACAAGAAAATTTTCGAAACCATGTATT 455258 Query 124018 ACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACG 124077 ||||||| ||||| |||||||||||| | || ||| |||| ||||||||| |||| Sbjct 455259 ACGGCGCGTTGGAAGCGAGCTGCGAATTGGCCGAAAAAGACGGGCCGTACGAAACGTACG 455318 Query 124078 CGGG 124081 ||| Sbjct 455319 AGGG 455322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 123589 TTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACA 123648 || ||||| | || || ||||| || || |||||| || ||||| ||||| |||| Sbjct 454696 TTCTCGAATCTCAGGTGGAAACAGGTACACCGTACTTGACGTACAAGGACGCGAGCAATC 454755 Query 123649 GGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTA 123708 | |||| || |||| || || ||||| || ||||| |||||| | ||| ||||||||| Sbjct 454756 GAAAAAGTAACCAGAAAAATTTAGGAACGATCAAATGCAGTAATTTGTGCACCGAAATTA 454815 Query 123709 TCGAATACAG 123718 |||| ||||| Sbjct 454816 TCGAGTACAG 454825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451919924060440