Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 138 3e-27
seq12471 120 7e-22
>seq13894
Length=1211295
Score = 138 bits (152), Expect = 3e-27
Identities = 158/211 (75%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCAT 199475
||| ||||| || || ||||| |||||| |||| |||||| || | ||| || | ||||
Sbjct 231732 CAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCAT 231791
Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCT 199535
||||||| || || ||||| ||||| | ||||||||| |||||| ||| |||||| |
Sbjct 231792 CTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGT 231851
Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
| || || || ||||||| ||||| || || | | ||| || || | |||||| |
Sbjct 231852 CTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGG 231911
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || || | ||||||||| ||||| ||
Sbjct 231912 TCTTCCCAGTTAAAGTTTTCACGAAAATCTG 231942
Score = 127 bits (140), Expect = 5e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| ||||| || || || ||||| || |||| |||||| || | ||| |||| |||||
Sbjct 231961 CAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATC 232020
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| |||||||| |||||||| | || ||||| || || || || ||| ||
Sbjct 232021 TTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTC 232080
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| || || ||| ||| ||| | |||||||| || ||| || ||||| ||||| ||
Sbjct 232081 TTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGT 232140
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | |||||||||||||| ||
Sbjct 232141 TTTTCCAGTTAAGGTTTTCACAAAAATCTG 232170
Score = 100 bits (110), Expect = 7e-16
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|||||||| |||||||| ||||||||||| |||| ||| ||||||||||| ||||||||
Sbjct 232044 ATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAACATCCAGAAA 231985
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| || ||||| |||||
Sbjct 231984 GAGTCAACCCTTCATCTTGT 231965
Score = 98.7 bits (108), Expect = 2e-15
Identities = 151/215 (70%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480
|| || || || ||||| ||||| |||| ||||||||| | || || | |||||||||
Sbjct 232193 ACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTCC 232252
Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540
| ||||| || || || || | || ||||| ||||| || |||||| |||||
Sbjct 232253 AATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTGG 232312
Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600
|| || ||||||| ||| | || || | | || || || | || || ||||||
Sbjct 232313 ATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTTA 232372
Query 199601 CCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || | |||||||||||||| || ||||||
Sbjct 232373 CCGGTTAAGGTTTTCACAAAAATCTG---CATTTT 232404
>seq12471
Length=105862
Score = 120 bits (132), Expect = 7e-22
Identities = 145/195 (74%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GTCCTTCCATCTTCCAGCTGCTTTCC 199491
||||| || || |||| ||||||||| || || || | || ||||| |||||||||||
Sbjct 73662 GTCGATTCTTTCTGGATGTTGTAGTC-GCTAAGTGTGCGGCCGTCTTCGAGCTGCTTTCC 73720
Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551
||||| || | ||||| || || ||| ||||||||| ||||||||||| |||
Sbjct 73721 AGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTT 73780
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
|||| |||| ||||| ||| || || ||||| || || || || || ||||| ||
Sbjct 73781 CACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAAGTAATAGTTTTTCCAGTGAGGGT 73840
Query 199612 TTTCACAAAAATTTG 199626
||| |||||||| ||
Sbjct 73841 TTTAACAAAAATCTG 73855
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| |||| || | |||||| || ||||||||||||| |||||| || ||| ||
Sbjct 72147 CGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTG 72206
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || || || || || ||||| | ||||| ||||| || ||||||
Sbjct 72207 CGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCC 72266
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || || ||||| ||| || ||| | |||||| ||| || || |||||
Sbjct 72267 TCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAAT 72326
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || ||||| ||||| || ||
Sbjct 72327 GTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTG 72364
Score = 104 bits (114), Expect = 6e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
|| || || | ||| || ||||| || || |||| |||||| || | || | ||||
Sbjct 73126 CTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCA 73185
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534
||||||| || ||||| ||||| || | |||||| || |||||| ||| ||||||
Sbjct 73186 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTG 73245
Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594
|| |||||||| || || |||| ||||| ||| || || || | ||| ||
Sbjct 73246 TCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATA 73305
Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| ||||| |||||||| ||
Sbjct 73306 GTTTTTCCAGTGAGGGTTTTGACAAAAATCTG 73337
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| ||||| || || || || | ||||||||| |||||| | ||||||
Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| || || ||||||||||| | |||||| || || ||| ||| |||||| ||
Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||| || | ||| || ||| || || ||||| || || ||
Sbjct 73539 TGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTT 73598
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| ||||| || || || ||
Sbjct 73599 TTTCCAGTGAGTGTTTTGACGAAGATCTG 73627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178698968392513
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |