Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq13894 138 3e-27 seq12471 120 7e-22 >seq13894 Length=1211295 Score = 138 bits (152), Expect = 3e-27 Identities = 158/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCAT 199475 ||| ||||| || || ||||| |||||| |||| |||||| || | ||| || | |||| Sbjct 231732 CAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCAT 231791 Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCT 199535 ||||||| || || ||||| ||||| | ||||||||| |||||| ||| |||||| | Sbjct 231792 CTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGT 231851 Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 | || || || ||||||| ||||| || || | | ||| || || | |||||| | Sbjct 231852 CTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGG 231911 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || | ||||||||| ||||| || Sbjct 231912 TCTTCCCAGTTAAAGTTTTCACGAAAATCTG 231942 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || || || ||||| || |||| |||||| || | ||| |||| ||||| Sbjct 231961 CAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATC 232020 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| |||||||| |||||||| | || ||||| || || || || ||| || Sbjct 232021 TTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTC 232080 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || || ||| ||| ||| | |||||||| || ||| || ||||| ||||| || Sbjct 232081 TTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGT 232140 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||||||||||| || Sbjct 232141 TTTTCCAGTTAAGGTTTTCACAAAAATCTG 232170 Score = 100 bits (110), Expect = 7e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| |||||||| ||||||||||| |||| ||| ||||||||||| |||||||| Sbjct 232044 ATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAACATCCAGAAA 231985 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| || ||||| ||||| Sbjct 231984 GAGTCAACCCTTCATCTTGT 231965 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || ||||| ||||| |||| ||||||||| | || || | ||||||||| Sbjct 232193 ACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTCC 232252 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||| || || || || | || ||||| ||||| || |||||| ||||| Sbjct 232253 AATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTGG 232312 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || ||||||| ||| | || || | | || || || | || || |||||| Sbjct 232313 ATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTTA 232372 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || | |||||||||||||| || |||||| Sbjct 232373 CCGGTTAAGGTTTTCACAAAAATCTG---CATTTT 232404 >seq12471 Length=105862 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||||| || || |||| ||||||||| || || || | || ||||| ||||||||||| Sbjct 73662 GTCGATTCTTTCTGGATGTTGTAGTC-GCTAAGTGTGCGGCCGTCTTCGAGCTGCTTTCC 73720 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||| || | ||||| || || ||| ||||||||| ||||||||||| ||| Sbjct 73721 AGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTT 73780 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 |||| |||| ||||| ||| || || ||||| || || || || || ||||| || Sbjct 73781 CACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAAGTAATAGTTTTTCCAGTGAGGGT 73840 Query 199612 TTTCACAAAAATTTG 199626 ||| |||||||| || Sbjct 73841 TTTAACAAAAATCTG 73855 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| |||| || | |||||| || ||||||||||||| |||||| || ||| || Sbjct 72147 CGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTG 72206 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || || || ||||| | ||||| ||||| || |||||| Sbjct 72207 CGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCC 72266 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| || ||| | |||||| ||| || || ||||| Sbjct 72267 TCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAAT 72326 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| ||||| || || Sbjct 72327 GTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTG 72364 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | ||| || ||||| || || |||| |||||| || | || | |||| Sbjct 73126 CTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCA 73185 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||| || ||||| ||||| || | |||||| || |||||| ||| |||||| Sbjct 73186 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTG 73245 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || |||||||| || || |||| ||||| ||| || || || | ||| || Sbjct 73246 TCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATA 73305 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| |||||||| || Sbjct 73306 GTTTTTCCAGTGAGGGTTTTGACAAAAATCTG 73337 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || || || || | ||||||||| |||||| | |||||| Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || ||||||||||| | |||||| || || ||| ||| |||||| || Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | ||| || ||| || || ||||| || || || Sbjct 73539 TGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTT 73598 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || || || Sbjct 73599 TTTCCAGTGAGTGTTTTGACGAAGATCTG 73627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178698968392513