Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12471 131 2e-25 seq13894 91.5 2e-13 >seq12471 Length=105862 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| || | ||| |||| |||||| || || || ||||| ||||||||| Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| || ||||| ||||| ||||| || |||| || Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||||| ||| | || | | ||||||||| | ||||| Sbjct 73752 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACC 73811 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || ||||| || || || ||||||||||| || ||||| Sbjct 73812 TCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| ||| | ||||| | || ||||| || || || || || Sbjct 72176 CTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGTTGTTTACCAGCAAA 72235 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||||| ||| | | ||| ||||| |||||| ||||| | Sbjct 72236 GATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATT 72295 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || | || || |||| |||||||| ||||| ||||| ||||| || Sbjct 72296 TTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGAC 72355 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 72356 AAAGATCTGCAT 72367 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || || | |||| ||||| || ||||||||||| ||||| ||| Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | || || || ||||| ||||| ||||| || || | || Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| || || |||||| |||| | | | |||||| || | ||| || Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACC 72776 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| |||| || ||||| ||||||||||| Sbjct 72777 TCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 >seq13894 Length=1211295 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||||||||||||| |||||||| | || ||||| ||||| |||||||||||| Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | |||||||| || || || || || ||||| || | || Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || ||| ||| ||| ||| | | | | ||| ||| | || || Sbjct 232295 ATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACT 232354 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || ||||| || || || | ||||| ||||| || |||||||| Sbjct 232355 TCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||||| || ||||| | || ||| || ||||| ||||| ||||| Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||||| || ||||| ||||| || ||||| || | || Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| ||| ||| ||| | | | | ||||| | ||| || Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || | ||||| ||||| || ||||| Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565134261890280