Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq13894 116 3e-21 seq12471 98.7 7e-16 >seq13894 Length=1211295 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| |||| |||||||||| ||| ||| || || || || ||||||| | Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| |||||||| |||||||| |||||||||||| || || || | || Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGC-AAAAATTAAACGTTGTTGGTCGGGTGG 231608 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| ||||| || | || | | ||||| | ||| || Sbjct 231609 GATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGAC 231668 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 231669 TTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGT-GCTTTCTTTTTGTATATTATAATCGGC 39551 ||||||| ||||||||| || | ||| | || | || |||| || || || ||||| | Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| |||| |||||| ||| |||| || |||||||||||||||| || Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| ||||| || | | | | ||| || | ||| || Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || ||||||||||| ||||| |||||||| Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||| | ||| | || ||||| || || || ||||||| | Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| |||||||| ||||||| | || || || || |||||||| | || Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCG-CGAAGATCAATCGTTGCTGATCTGGTGG 232065 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| |||||||| ||||| |||| | | | ||||||| ||| || Sbjct 232066 GATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGAC 232125 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 232126 TTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 >seq12471 Length=105862 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| || || |||||||||| |||| ||| ||||| || || |||||| | Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||||||||| || | ||||| |||||||| ||||||| || Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || ||||| || | || || | | || ||| | ||| || | ||| | Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGG--TTCAA 72774 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || ||||| || || || || || || || || |||||||| |||||| Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||| | || ||||| || | || |||||| || || || |||||| Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| ||||||||||| || | ||||| |||||||| ||||||| || Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || || | || || ||| || ||| || || || | Sbjct 73234 ATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGC--TCAA 73291 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||||| ||||| || || | ||||| || || |||||||| Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||| | || ||||| || | ||| |||||| || || || || ||| Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| ||||| ||||| ||| ||||||| | |||||| ||||| | || Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TCC 39669 | ||||| || || ||||| ||| | || | | ||||| |||| || Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTC---GCTTGGCTCA 72545 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| || || || || | |||||| || ||||||||||| Sbjct 72546 ACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347307201455987