Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 116 3e-21
seq12471 98.7 7e-16
>seq13894
Length=1211295
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||| |||| |||||||||| ||| ||| || || || || ||||||| |
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| || |||| |||||||| |||||||| |||||||||||| || || || | ||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGC-AAAAATTAAACGTTGTTGGTCGGGTGG 231608
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| |||||||||||| ||||| || | || | | ||||| | ||| ||
Sbjct 231609 GATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGAC 231668
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 231669 TTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 111 bits (122), Expect = 1e-19
Identities = 162/228 (71%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGT-GCTTTCTTTTTGTATATTATAATCGGC 39551
||||||| ||||||||| || | ||| | || | || |||| || || || ||||| |
Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| || |||| |||| |||||| ||| |||| || |||||||||||||||| ||
Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| |||||||||||| ||||| || | | | | ||| || | ||| ||
Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || || || || ||||||||||| ||||| ||||||||
Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| |||||||||||| | ||| | || ||||| || || || ||||||| |
Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006
Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| || |||| |||||||| ||||||| | || || || || |||||||| | ||
Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCG-CGAAGATCAATCGTTGCTGATCTGGTGG 232065
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| ||| |||||||| ||||| |||| | | | ||||||| ||| ||
Sbjct 232066 GATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGAC 232125
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||||||| || ||||| || ||||| ||||| || || ||||||||
Sbjct 232126 TTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
>seq12471
Length=105862
Score = 98.7 bits (108), Expect = 7e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||| || || |||||||||| |||| ||| ||||| || || |||||| |
Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| || |||| ||||||||||| || | ||||| |||||||| ||||||| ||
Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| || ||||| || | || || | | || ||| | ||| || | ||| |
Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGG--TTCAA 72774
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
| || ||||| || || || || || || || || |||||||| ||||||
Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||||| ||| | || ||||| || | || |||||| || || || ||||||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| |||| |||| ||||||||||| || | ||||| |||||||| ||||||| ||
Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||||||||| | || || | || || ||| || ||| || || || |
Sbjct 73234 ATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGC--TCAA 73291
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | ||||| ||||| || || | ||||| || || ||||||||
Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||||| ||| | || ||||| || | ||| |||||| || || || || |||
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| ||| |||| ||||| ||||| ||| ||||||| | |||||| ||||| | ||
Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT---TCC 39669
| ||||| || || ||||| ||| | || | | ||||| |||| ||
Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTC---GCTTGGCTCA 72545
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || | |||||| || || || || | |||||| || |||||||||||
Sbjct 72546 ACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347307201455987
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |