Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq13235 167 9e-36 seq12471 120 1e-21 seq13894 116 1e-20 seq12614 86.0 2e-11 seq12177 86.0 2e-11 seq7061 84.2 9e-11 seq4564 84.2 9e-11 >seq13235 Length=296648 Score = 167 bits (184), Expect = 9e-36 Identities = 702/1088 (65%), Gaps = 38/1088 (3%) Strand=Plus/Plus Query 451200 CCTATATTCAAG-TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCA 451258 |||| | ||||| | | || ||||| |||| || || ||| || |||||||| || Sbjct 65839 CCTAAAATCAAGGTCGAATACAAAGGCGAAATGAAGACCTTTTTCCCCGAAGAAATCTCC 65898 Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || |||||| | || |||||||| ||||| || ||| || | || | || | | Sbjct 65899 TCCATGGTTTTAACCAAAATGAAGGAAACCGCCGAAGCTTACTTAGGCAAAACTGTAAAT 65958 Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||||| | ||||| || ||||| || || ||| | ||||| ||||| || || ||| Sbjct 65959 AATGCAGTCGTCACTGTCCCAGCTTACTTTAACGATTCCCAACGCCAAGCCACCAAGGAT 66018 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || ||||||||||| ||||| ||||| || || || || || ||||| |||||| Sbjct 66019 GCCGGCACCATTGCTGGTTTGAATGTGCTTCGCATCATCAACGAGCCCACAGCCGCTGCT 66078 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || ||||| ||| || || | | ||| ||| | | | || ||| Sbjct 66079 ATTGCTTACGGACT-GGACAA--GAAGGTTGGTGGAGAGCGAAACGTGCTCATTTTCGAT 66135 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || || || || || ||| || | | | |||||||| || | ||||||||| Sbjct 66136 TTGGGCGGTGGTACCTTCGATGTGTCGATTTTGACCATTGAAGACGGCATTTTTGAAGTA 66195 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA- 451617 || | ||| ||| ||||| ||| | || || |||||| | ||||| ||| || | Sbjct 66196 AAATCGACCGCTGGAGATACCCATTTGGGCGGAGAAGATTTCGATAACCGAATGGTCAAC 66255 Query 451618 -ATGGTTGAAAACTGATGTTCAA-CGAAAACTAAAAGTAGATATTTCTACTAACCAAAAA 451675 || ||| | | || |||||| |||||| ||| ||| | || ||||| || Sbjct 66256 CAT-TTTGTACA-AGA-GTTCAAGAGAAAACACAAAAAGGATTTGACTTCTAACAAACGC 66312 Query 451676 GCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAA-----TTA-CACTCAGTTCA 451729 || | || | |||| |||| || ||| || || | ||| || |||| Sbjct 66313 GCCGTGAGGAGACTTAGAACAGCATGCGAACGTGCGAAGAGGACCTTATCATCCAGT--- 66369 Query 451730 ACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACT 451789 || ||| | || || | |||||| || | || || | || | | || | Sbjct 66370 ACTCAA---GCGAGCATCGAGATTGATTCCCTATTCGAAGGCGTCGACTTTTACACGTCG 66426 Query 451790 CTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATT-TTTGCACGGGTAATGAAACC 451848 ||||||| |||| |||||| |||| | | || ||| | | || | || Sbjct 66427 ATTACCCGAGCTAGGTTTGAA-GAATTGAACGCCGACTTGTTTCGATCAACACTGGACCC 66485 Query 451849 TGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCT 451908 ||||| | | |||| ||| | || | ||||| | || || | || ||||| || Sbjct 66486 CGTTGAGAAGGCCTTACGCGATGCAAAGCTGGATAAAGCTCAAGTTCACGACATTGTTCT 66545 Query 451909 TGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTC----TTATTTTG 451964 ||| |||||||| || |||||||| ||||| ||| | || |||| || |||| Sbjct 66546 TGTTGGAGGTTCAACCCGAATTCCCAAAATCCAAAAACTG----CTTCAAGATTTTTTTA 66601 Query 451965 GAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAG 452024 || ||| || || || ||| | || || |||||||| ||||| || || ||||| | Sbjct 66602 ATGGCAAAGAATTAAACAAAAGCATCAACCCAGATGAAGCAGTTGCTTACGGCGCTGCTG 66661 Query 452025 TTCAAGCAGC--TATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGT 452082 | ||||| || |||| | | | | || |||| | | ||| | |||| | Sbjct 66662 TGCAAGCCGCGATATTGCATGGCGAT-AAAT-CTGAAGCAGTCCAGGATTTGTTGTTGCT 66719 Query 452083 AGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAAT 452142 ||||| |||| || || || || ||||||| || |||||| | ||||| || || Sbjct 66720 CGATGTTGCACCGCTGTCCCTCGGCATTGAAACTGCCGGTGGAGTCATGACGGTGTTGAT 66779 Query 452143 TAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAA 452202 || || || ||||||| ||| | | ||||||||| | || || || Sbjct 66780 CAAGCGCAACACCACTATTCCAACCAAACAAACTCAAACATTCACCACTTATTCGGACAA 66839 Query 452203 CCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAA--T 452260 |||||| || || |||||||| | ||||||||| ||||| ||||| ||| || | Sbjct 66840 CCAACCCGGAGTTTTGATTCAAGTCTATGAAGGAGAGCGTGCCATGACCAAAGACAATGT 66899 Query 452261 AATAAACT 452268 || ||||| Sbjct 66900 AAGAAACT 66907 Score = 116 bits (128), Expect = 1e-20 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 ||||||||||||| |||| | || | ||||| |||||||| | || ||| |||||| Sbjct 67025 TCCTCAAATTGAAGTTACGTTCGACATCGATGCTAATGGTATCTTGAACGTGTCTGCAGT 67084 Query 452374 TGA-AAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTAT 452432 ||| || | || | |||||| | | ||||| || ||||| || ||||| ||| || Sbjct 67085 TGATAAGAGCA-CCGGAAAAGAAAACAAAATCACGATTACCAACGATAAGGGCCGATTGA 67143 Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 |||||||| |||||| ||||||| | ||||| || |||| ||||| ||||||||| Sbjct 67144 GCAAAGAAGAAATTGAACGAATGGTACAGGAAGCCGATAAATACAAGGCTGATGATGA 67201 >seq12471 Length=105862 Score = 120 bits (132), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || ||||| ||||||||||| || || ||||| || Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | ||| || |||||||| || ||||| |||||||| |||||| Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || |||||| | ||||||||| | || | ||||| || Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | || || | || |||||||| || | || ||||||| Sbjct 73160 ATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGG 73117 Score = 107 bits (118), Expect = 8e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || ||||| || || |||||||| || ||||| || Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | ||| ||||||||||||||||||||||| || || |||||| Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || ||||| | || ||||| | ||||| || || || Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || |||||||| || | || ||||||| Sbjct 72415 ATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGG 72372 Score = 96.9 bits (106), Expect = 1e-14 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| |||||||| || ||||| |||||||||||| | || || || || Sbjct 73861 ATCATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCA 73802 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || | || || | || || ||||| |||||||||||||||||||| ||| Sbjct 73801 AGCGACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGAT 73742 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 ||||| || || |||||| | || || || || ||||| || Sbjct 73741 CAACAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGG 73701 Score = 95.1 bits (104), Expect = 5e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| |||||||| || || || || | || || || | | Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || || ||||| || ||||| || || || |||||| Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC-TTTGGCGGATTATAA 391228 || ||| |||| || | ||||||||||| |||||||| | || || || ||||| || Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGC-GATTACAA 72934 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 ||| | || || |||| ||||| || || ||| Sbjct 72933 CATTCAGAAAGAATCAACGCTTCATTTGGTTTTA 72900 >seq13894 Length=1211295 Score = 116 bits (128), Expect = 1e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| | || || || || ||||| || || || ||| |||| Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||||| || || || ||||| || || || || ||| Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||||||||| | || || ||| | |||||||| |||| ||| | ||||| || Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || || || || || || ||||||| Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGG 231493 >seq12614 Length=760689 Score = 86.0 bits (94), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 391151 AGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG 391210 |||||||||||| ||||||||||| || ||||| | || ||||| |||||||||||| | Sbjct 131260 AGGAATTCCTCCGGATCAACAACGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 131201 Query 391211 AACTTTGGCGGATTATAATATTGATAAGGA 391240 || ||| | || ||||| ||| | ||||| Sbjct 131200 TACGTTGTCCGACTATAACATTCAGAAGGA 131171 >seq12177 Length=61224 Score = 86.0 bits (94), Expect = 2e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 391151 AGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG 391210 ||||||||| || || ||||| || || ||||| | ||||||||| | ||||||||||| Sbjct 22543 AGGAATTCCGCCCGACCAACAGCGATTGATTTTTGCCGGGAAACAATTGGAAGATGGAAG 22602 Query 391211 AACTTTGGCGGATTATAATATT 391232 |||||| |||||||||| ||| Sbjct 22603 AACTTTATCGGATTATAACATT 22624 >seq7061 Length=6671 Score = 84.2 bits (92), Expect = 9e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 || || |||||||| | || || ||| | || || | ||| || || |||| | Sbjct 2769 ATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGAGCATTCGGATACC 2828 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || || ||| ||| |||| ||||||||||| |||||||| | || || || ||| | Sbjct 2829 ATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGCAAAGA 2888 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 ||||| || | || ||||| | ||||||| || | | | | ||||| ||||| | Sbjct 2889 TTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAATATACAG 2948 Query 391236 AAGGATGCAACACTT--CACTTAGTATTAAGA 391265 || || ||||||| || |||||||||||| Sbjct 2949 AAAGA--AAACACTTTACATTTAGTATTAAGA 2978 >seq4564 Length=627493 Score = 84.2 bits (92), Expect = 9e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || |||||||| || || ||||| || |||||||| | ||| | ||||||||||| Sbjct 243589 GCTACCAAAGATGCTGGTCAGATTGCAGGATTAAATGTATTACGAGTAATTAATGAACCG 243648 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 |||||||| ||||| || |||||| | | |||||| Sbjct 243649 ACAGCAGCGGCTCTTGCTTATGGAATGGACAAATCA 243684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975345298545812