Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq13235 302 3e-76 seq12593 118 8e-21 seq14046 116 3e-20 seq12159 96.9 3e-14 seq14178 95.1 9e-14 seq13338 95.1 9e-14 seq14070 86.0 5e-11 seq13938 86.0 5e-11 >seq13235 Length=296648 Score = 302 bits (334), Expect = 3e-76 Identities = 554/802 (69%), Gaps = 15/802 (2%) Strand=Plus/Minus Query 517592 ATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTT 517651 || || ||||| | |||||| || || ||||| |||||||| || || | ||| ||| Sbjct 66674 ATCGCGGCTTGCACAGCAGCGCCGTAAGCAACTGCTTCATCTGGGTTGATGCTTTTGTTT 66615 Query 517652 AGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGAT 517711 | || ||| ||||| ||||||| | ||| |||| | | || ||||| || | ||| Sbjct 66614 AATTCTTTGCCATTAAAAAAATCTTGAAGCAGTTTTTGGATTTTGGGAATTCGGGTTGAA 66555 Query 517712 CCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACT 517771 |||||||| | ||||| || || || || | ||||||||| |||| ||| ||| | Sbjct 66554 CCTCCAACAAGAACAATGTCGTGAACTTGAGCTTTATCCAGCTTTGCATCGCGTAAGGCC 66495 Query 517772 TTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 517831 || |||||||| || || | || ||||||||| | | |||||| || ||||| Sbjct 66494 TTCTCAACGGGGTCCAGTGTTGATCGAAACAAGTCGGCGTTCAATTCTTCAAACCTAGCT 66435 Query 517832 CTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAG 517889 | |||| | || | || || || | |||||||| | ||||||| || || | | Sbjct 66434 CGGGTAATCG--ACGTGTAAAAGTCGACGCCTTCGAATAGGGAATCAATCTCGATGCTCG 66377 Query 517890 TTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA 517949 |||||| || |||| | | || |||||||| |||||||| || ||||| | | Sbjct 66376 CTTGAGTACTGGATGATAAGGTCCTCTTCGCACGTTCGCATGCTGTTCTAAGTCTCCTCA 66317 Query 517950 AGGCT--TTTGCT-GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACAC 518006 ||| |||| | || | ||||||| |||| | |||||||||||| |||| ||| Sbjct 66316 CGGCGCGTTTGTTAGA---AGTCAAATCCTTTTTGTGTTTTCTCTTGAACTCTTGTACAA 66260 Query 518007 ACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGT 518064 | ||| | || | || ||||| |||||||| || ||||| | |||| ||| | || Sbjct 66259 A--ATGGTTGACCATTCGGTTATCGAAATCTTCTCCGCCCAAATGGGTATCTCCAGCGGT 66202 Query 518065 AGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACC 518124 | | |||||| |||| || ||||||| | ||||| | ||||| ||| ||||| Sbjct 66201 CGATTTTACTTCAAAAATGCCGTCTTCAATGGTCAAAATCGACACATCGAAGGTACCACC 66142 Query 518125 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGC 518184 |||| ||| ||||| || || || ||| | || || || || || || || Sbjct 66141 GCCCAAATCGAAAATGAGCACGTTTCGCTCTCCACCAACCTTCTTGTCCAGTCCGTAAGC 66082 Query 518185 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 518244 || |||||| || || || || || || || | | ||||| | ||||||||| | || Sbjct 66081 AATAGCAGCGGCTGTGGGCTCGTTGATGATGCGAAGCACATTCAAACCAGCAATGGTGCC 66022 Query 518245 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||||| || |||||||| | ||| ||||||||||| || || || ||||| | || || Sbjct 66021 GGCATCCTTGGTGGCTTGGCGTTGGGAATCGTTAAAGTAAGCTGGGACAGTGACGACTGC 65962 Query 518305 ATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCAT 518364 || | |||| ||| || | ||||| || |||| |||||||| |||||| ||| Sbjct 65961 ATTATTTACAGTTTTGCCTAAGTAAGCTTCGGCGGTTTCCTTCATTTTGGTTAAAACCAT 65902 Query 518365 TGATGAAATTTGTTCTGGGGAA 518386 || || |||| ||| |||||| Sbjct 65901 GGAGGAGATTTCTTC-GGGGAA 65881 Score = 86.0 bits (94), Expect = 5e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 518599 ||||| || || |||| | ||| || ||||| || || || |||| || || ||||| Sbjct 65659 GGATTCATGGCCACTTGGTTTTTCGCCGCATCACCGATAAGGCGTTCGGTATCGGTAAAA 65600 Query 518600 GAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCA 518659 | || || || || || || || || ||||| || || |||||||||||||| ||| Sbjct 65599 GCGACGTAGCTGGGTGTAGTTCGGTTGCCCTGATCGTTAGCGATAATTTCAACTTTGCCA 65540 Query 518660 TTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 518706 | ||| |||| ||||| || |||||||||| | ||| || || Sbjct 65539 TGTTGAAATACTCCTACGCACGAGTAAGTTGTTCCAAGATCGATTCC 65493 >seq12593 Length=225266 Score = 118 bits (130), Expect = 8e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 ||||||| ||| || ||||||||||| ||||| |||||| |||| ||||| | ||||| Sbjct 76290 GTCGATTTTTCATCGCCAAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGCTCAACG 76231 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922 ||||| ||||| ||||||| | || | || | ||| || ||||| | ||| Sbjct 76230 ATTATCGGTGATAGTATTTGTCGAGTTCTTGAGTTTGTTGGTCATAATGTTACCAGGATT 76171 Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 870970 ||||| || ||||| ||||| || |||||||| ||| |||||||| || Sbjct 76170 AATCACGTCGGTGACTGGGGCACGCAATTCGGCATGCTAATTGCTCAT 76123 >seq14046 Length=357214 Score = 116 bits (128), Expect = 3e-20 Identities = 133/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || |||||||| |||| || |||| ||| ||||| ||| |||| ||||| ||||| || Sbjct 10015 GGCTCATTAATGATTCGCATAACAACAAGTCCAGCTATTGTTCCAGCATCCTTAGTTGCC 10074 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTT 518319 || | ||| | |||||||||||| ||||| ||||| | ||| |||| | || |||||| Sbjct 10075 TGGCGTTGAGCATCGTTAAAATAAGCAGGTACAGTCACAACAGCATGCGACACTTTCTTT 10134 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 518375 |||| |||||| || ||| ||||||||| | |||| ||| | ||||||| Sbjct 10135 CCCAA-ATAAGCTTCGGCAATTTCCTTCATTTTAATCAAAACCATCGCGGAAATTT 10189 Score = 93.3 bits (102), Expect = 3e-13 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563 || ||||||||||| ||||| |||| || || |||||| | | ||||| ||| Sbjct 10376 CCGATTAATCGTTTAGCATCGAAAACCGTGTTTTCGGGATTACTAGTCAATTGATTTTTC 10435 Query 518564 GCTGCATCTCCAATCAGATGTTCTGTCTC---TGTAAATGAAACATATGATGGAGTTGTG 518620 || ||||||||||| ||| ||||| || ||||| | || ||||| ||||| || Sbjct 10436 GCGGCATCTCCAATTAGACGTTCTCCTTCCGGAGTAAAAGCCACGTATGAAGGAGTGATG 10495 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAAC 518652 || || ||||||||||| |||||||| || || Sbjct 10496 CGGTTGCCTTGATCATTGGCAATAATCTCTAC 10527 >seq12159 Length=131859 Score = 96.9 bits (106), Expect = 3e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 635406 ATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 635465 |||| ||||||||||||| || | | | |||||||||||||| || || |||| Sbjct 69002 ATGCAAACAAGGCAGGAACAAAGTTTTCAACTGATTGTACCCTAATTTTAACTGAAGGAG 68943 Query 635466 ATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATGGAG 635525 ||||||| || | || ||| | |||||| | ||| ||||| |||||| |||| || | Sbjct 68942 ATTCAGCCAAGTCTTTGGCTGTTTCTGGTTTGGGTGTCATTGGCAGAGATAATTACGGTG 68883 Query 635526 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTAAAAAA 635578 ||||||| || || || ||| | | || ||| | || |||| | |||| || Sbjct 68882 TTTTCCCTCTGAGGGGTAAAATGCTCAACGTTCGCGAAGCTACGCATAAACAA 68830 >seq14178 Length=603277 Score = 95.1 bits (104), Expect = 9e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 668846 AGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATG 668905 ||||| | ||| |||||||| | ||| | |||||||| ||||||||||| || || | Sbjct 43643 AGATTGAAAGGAAAAGAAGGAAGAATTCGTGGAAATTTAATGGGAAAACGAGTTGACTTC 43702 Query 668906 TCTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCT 668965 || ||||| || || || || | ||||| ||| || | || || ||||||| ||||| Sbjct 43703 TCAGCACGAACTGTCATCACACCAGATCCGAATCTTCGTATCGATCAAGTTGGAGTTCCA 43762 Query 668966 CTTATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACA 669007 | | |||||| ||||| | || ||| || ||||| ||| Sbjct 43763 CGTTCAATTGCTCAAAATTTAACATTTCCTGAGATTGTCACA 43804 >seq13338 Length=646138 Score = 95.1 bits (104), Expect = 9e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 668844 AAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATA 668903 ||||||| | ||| |||||||| | || | ||||||||||||||||| ||||||||| Sbjct 164435 AAAGATTGAAAGGAAAAGAAGGAAGAGTTCGTGGAAATTTGATGGGAAAGCGTGTCGATT 164376 Query 668904 TGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTC 668963 | || || | || |||||||| ||||||||||| || | || | |||||||| | Sbjct 164375 TTTCAGCCAGGACGGTTATTACCCCTGATCCCAATCTTCGCATTGATCAGGTTGGTGTGC 164316 Query 668964 CTCTTATTATTGCTAAAAATCTTACTT 668990 | | | |||||| | ||| | |||| Sbjct 164315 CACGTTCGATTGCTCAGAATTTAACTT 164289 >seq14070 Length=708083 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 367009 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTATGGAGCTCCC 367068 ||||| |||||||| ||| ||||||| ||||| || |||||||||| ||||| || Sbjct 4176 GCATTCGGTATGGGGATTGATAAACCCGATGTGCGACAAATTATTCATTACGGAGCACCG 4117 Query 367069 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 367118 || | || || || ||||||||||| ||| |||| ||||||||||| Sbjct 4116 AAAGACATCGAGTCGTACTATCAAGAAATCGGTCGAGCTGGTCGTGATGG 4067 >seq13938 Length=223151 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 367009 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTATGGAGCTCCC 367068 ||||| |||||||| ||| ||||||| ||||| || |||||||||| ||||| || Sbjct 212739 GCATTCGGTATGGGGATTGATAAACCCGATGTGCGACAAATTATTCATTACGGAGCACCG 212680 Query 367069 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 367118 || | || || || ||||||||||| ||| |||| ||||||||||| Sbjct 212679 AAAGACATCGAGTCGTACTATCAAGAAATCGGTCGAGCTGGTCGTGATGG 212630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780091002269734