Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13151 356 3e-93 seq13235 325 5e-84 seq14046 89.7 7e-13 seq10189 84.2 3e-11 >seq13151 Length=83164 Score = 356 bits (394), Expect = 3e-93 Identities = 1038/1581 (66%), Gaps = 33/1581 (2%) Strand=Plus/Minus Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642 |||||| ||||| || | |||||| || || || | ||||||| | || ||||| Sbjct 74380 ATACTTCTCCGCGTCCTTAACCATCCGCTCTATCTCATTCCTCGATAACCGTCCTTTATC 74321 Query 6643 ATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAA 6702 || || || || || |||||||| || | | || || | |||||||| Sbjct 74320 GTTGGTTATAACGATTTTACTCGATTTACCGGAACTCGTCTCGGTCGCTGTAACATTCAA 74261 Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762 ||| ||||| ||||| | |||||| || | |||||| || | || | ||| || | Sbjct 74260 AATTCCATTCGCATCGATATCGAATGCGACTTCAATTTGCGGGATCCCGCGCGGCGCAGG 74201 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 |||| ||| | || || || || | |||| | |||| ||| | | | | || Sbjct 74200 CGGAAGTCCCATCAATTCGAACCGTCCTAATAAATTATTATTACTCGTCATGCTTCTCTC 74141 Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTG 6882 ||||| || || | | || ||| | ||||| || || ||| | ||| || | Sbjct 74140 GCCTTCGTACACCTGTACCGTGACCCCCGGTTGGTTGTCGGCGTACGTCGTGAACATGTT 74081 Query 6883 TTCTTTCTTAGATGGAATCGTCGTATTTCTCG-GAATAACCGGGGTCATAATACCACCCA 6941 | | || | |||||| || ||||| || ||| | |||| || || ||| Sbjct 74080 TGACGTTTTGAACGGAATCCGGGTGTTTCTTTCGACTAATTTCG-TCATTATTCCGCCCG 74022 Query 6942 TAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATT 7001 ||||||| ||| || || | || | || || | |||||| | ||| || | || Sbjct 74021 CGGTTTCGATTCCGAGTGATAATGGAGCAACATCGACGAGTAAAACGTCCTGGATGTTTT 73962 Query 7002 CGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061 || | || |||| || ||||| ||||| || | || ||| | || || || || | Sbjct 73961 CGCTTTTGTCTCCCGATATAATGGCCGCTTGAACAGCAGCGCCGAACGCCACAGCTTCGT 73902 Query 7062 CGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAA 7121 ||||||| || | | || ||||| || || | || |||| | | || || | Sbjct 73901 CGGGGTTGATACTCATGTTGAGTTCCTTCCCTTCGAAGAAATCTTGGAGTAATTTCTGTA 73842 Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA 7181 |||||| || || ||||| || ||||||||||||| || ||||| || ||||| | || Sbjct 73841 CTTTCGGAATCCGAGTCGAACCGCCGACCAAAACGACATCGTTCACGTTGGATTTCTTGA 73782 Query 7182 TCTTTGAGTC-TCGAAGTGTTTTTTCGACAGGTTCCATAC---ATTTACGGAACAAGTCC 7237 || | ||| | ||| | || || ||| ||| | |||| ||| || || Sbjct 73781 GTTTCGCGTCGTTCAAG-GCCCGATCCACGGGTCCCAGAGTCGATTT---GAATAAATCG 73726 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 || || | ||| || || | || | | || | ||| |||||||| |||||| Sbjct 73725 ATGCATAATTCTTCGAATCTGGCTCTCGACATTTTCGAATAAAAATCAACTCCGTCGAGC 73666 Query 7298 AACGAATCAATTTCAATGGTTGTTT--GTGCCG-TCGAAGATAACGTTCGCTTTGCGCGC 7354 |||| || | ||| || | || || |||| | |||| ||| | || || || | Sbjct 73665 AACGCGTCCAATTCGATCGATGCTTCGGTGCTGCTCGA---TAAAATCCGTTTGGCTCTT 73609 Query 7355 TCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGT 7414 || ||||| |||| ||| || | | || ||||| || ||||| | ||| || || | | Sbjct 73608 TCGCACGCGGTTCTTAACCGTCTCAAAGCTCGCGGATTCCCGGATAAATCCTTTTTGTAT 73549 Query 7415 TTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCC 7474 || | || || || ||| || | | || |||||||||||| || ||| Sbjct 73548 TTCCTACGGAATTCCTCGACGAAATGCGTCACCATTCGATTATCGAAATCTTCGCCGCCC 73489 Query 7475 AAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA---ATGTTTAAC 7531 || || ||||| ||||| || | || |||||||| || | |||||| ||| |||| Sbjct 73488 AAATGCGTATCACCCGCTGTGGATTGAACTTCAAACATGGCGCCTTCATCGATGGTTAAA 73429 Query 7532 AACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT 7591 | ||| || || || || ||||| || | || || || | ||| || | ||| || Sbjct 73428 ATCGACACGTCGAATGTCCCACCGCCTAAATCGAATATCAAAACG---GTTTTTTCGCCT 73372 Query 7592 TTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGA 7648 || |||||||| | ||||| || | ||||| || || || || ||||| || ||| Sbjct 73371 TTCAGATTCTTATCCAATCCGTAGGCCAACGCCGCAGCTGTCGGCTCGTTAATTATTCGA 73312 Query 7649 AG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 | ||| |||| || ||||| | |||||||||| ||||||||||||||||| ||||| Sbjct 73311 ATTACA-TTCAATCCTGCAATGGCGCCCGCATCTTTGGTCGCTTGTCGTTGCGAGTCGTT 73253 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 || || ||||| || |||| ||||| || | ||||| || | ||| | ||| || Sbjct 73252 GAAATACGCCGGAACAGTTATCACCGCATCTTTCACTTTAAGGCCTAAATAAGCTTCGGC 73193 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | || ||||||||| | ||||||||| || ||||| | | || ||| Sbjct 73192 TGTTTCCTTCATTTTGACTAAAACCATCGAACTGATTTCTTCCGGGGAGAATAATTTGTC 73133 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 ||| || || | | |||| || ||| ||||| |||| | | ||| ||| | | Sbjct 73132 TTCGCCTTTGTATTTCACTTTAAACATCGGTTT-GCCGCCGATAC--TGATCACCGTGAA 73076 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 || ||| | |||| || |||| || ||| ||| | |||||||| || || || Sbjct 73075 CGGCCATTGCTTCAAGTCTTCTTTGATCTGCGAGTCGTCGTATTTTCTTCCTATTAGTCG 73016 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 || || || |||| ||||||| ||||||||| | |||||||||| || || || || Sbjct 73015 TTTCGCGTCGAAAAGGGTGTTTTCGGGGTTCATCGACATTTGGTTCTTGGCTGCTTCGCC 72956 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 ||| || ||||| | || || || |||||||| ||||| ||||| || ||||| Sbjct 72955 GATTAGTCGTTC---GGTGTCGGTGAAGGCGACGTAGCTGGGGGTTGTTCGGTTGCCTTG 72899 Query 8068 GTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127 |||||| || || || || || ||| ||| | ||||| |||||||| || ||||| Sbjct 72898 GTCGTTGGCGATGATCTCGACTTTTCCGTGTTGAAATACGCCCACGCACGAGTAGGTTGT 72839 Query 8128 TCCTAAATCAATACCGATTGC 8148 ||||||||||| || || || Sbjct 72838 GCCTAAATCAATGCCTATGGC 72818 >seq13235 Length=296648 Score = 325 bits (360), Expect = 5e-84 Identities = 645/942 (68%), Gaps = 11/942 (1%) Strand=Plus/Minus Query 7019 AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078 || || |||||||| || | || ||||| || || || ||||| ||||| || |||| Sbjct 66677 AATATCGCGGCTTGCACAGCAGCGCCGTAAGCAACTGCTTCATCTGGGTTGATGCTTTTG 66618 Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138 || | |||||| || |||||| |||| | || || ||| ||||| || ||||| || Sbjct 66617 TTTAATTCTTTGCCATTAAAAAAATCTTGAAGCAGTTTTTGGATTTTGGGAATTCGGGTT 66558 Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198 || || || || | ||| || || | |||| | |||||| | ||||| || || | Sbjct 66557 GAACCTCCAACAAGAACAATGTCGTGAACTTGAGCTTTATCCAGCTTTGCATCGCGTAAG 66498 Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258 | || || || || |||| | || |||||||| || ||| ||||| | Sbjct 66497 GCCTTCTCAACGGGGTCCAGTGTTGATCGAAACAAGTCGGCGTTCAATTCTTCAAACCTA 66438 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 || |||||||| || || || || || ||||| ||| ||| |||||||| || ||| | Sbjct 66437 GCTCGGGTAATCGACGTGTAAAAGTCGACGCCTTCGAATAGGGAATCAATCTCGATGCTC 66378 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 | ||| | | || ||||| || | ||| || || || || || |||| | | | Sbjct 66377 GCTTGAGTACTGGATGATAAGGTCCTCTTCGCACGTTCGCATGCTGTTCTAAGTCTCCTC 66318 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC-AGAGAA 7437 | ||| || |||| | | ||| || || ||||| | || ||||||| | | || Sbjct 66317 ACGGCGCGTTTGTTAGAAGTCAAATCCTTTTTGTGTTTTCTCTTGAACTCTTGTACAAAA 66258 Query 7438 GTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 || || | || |||||||||||| || ||||| || ||||| || ||||||| Sbjct 66257 TGGTTGACC-ATTCGGTTATCGAAATCTTCTCCGCCCAAATGGGTATCTCCAGCGGTCGA 66199 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557 ||| |||||||| || || |||||||| | || | ||| ||||| || |||||||| || Sbjct 66198 TTTTACTTCAAAAATGCCGTCTTCAATGGTCAAAATCGACACATCGAAGGTACCACCGCC 66139 Query 7558 CAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617 || || |||||||| ||||| || | | ||||| || || ||||| || || Sbjct 66138 CAAATCGAAAATGAGCACGTTTCGCTCTCCACCAACCTTCTTGTCCAGTCCGTAAGCAAT 66079 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCG 7676 ||| || || || || || || || || ||||| ||| |||| |||||||| || | | Sbjct 66078 AGCAGCGGCTGTGGGCTCGTTGATGATGCGAAGCACA-TTCAAACCAGCAATGGTGCCGG 66020 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 |||| || || ||||| ||||| |||||||||||||| || ||||| || ||||| || | Sbjct 66019 CATCCTTGGTGGCTTGGCGTTGGGAATCGTTAAAGTAAGCTGGGACAGTGACGACTGCAT 65960 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 | || | || || | || | ||| ||| | || ||||||||||| | |||||| | Sbjct 65959 TATTTACAGTTTTGCCTAAGTAAGCTTCGGCGGTTTCCTTCATTTTGGTTAAAACCATGG 65900 Query 7797 ATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 | || || ||||| | | ||| || ||| |||| || || | || || | || | Sbjct 65899 AGGAGATTTCTTC-GGGGAAAAAGGTCTTCATTTCGCCTTTGTATTCGACCTTGATTTTA 65841 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 ||||| |||| || || ||| || | | | | ||||| |||||| || ||| | | Sbjct 65840 GGTTT-GCCGC--CATCGCTGATGACATCAAATGGCCAATGTTTCATGTCAGATTGCA-C 65785 Query 7916 TGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATC 7956 || | ||| ||| || | ||||| ||||| || || || Sbjct 65784 TGACGAATCCTCAAATTTACGACCGATCAGACGTTTAGCGTC 65743 >seq14046 Length=357214 Score = 89.7 bits (98), Expect = 7e-13 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 6587 TTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTC 6646 || ||||| || | || ||| ||||||||||||| | | ||| || || || Sbjct 8720 TTCTCCGCTTCATTGATCATTCTTTCAATGTCTTCGGGAGTAAGTCTGTTCTGGTCGTTT 8779 Query 6647 GTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATA 6706 ||||| || ||||| || || || | | | |||||||||||| ||| ||||||| Sbjct 8780 GTAATTGTGATCTTCTCTTTGTTTCCGGTGCCTTTATCTTCAGCAGATACTCTCAAAATG 8839 Query 6707 CCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCG--GCTG 6764 || ||| |||||| || || | || | ||||||| | || || ||| ||| | | Sbjct 8840 CCGTTTACATCAATCTCAAAAGTGACCTCGATTTGTG--GAACTCCACGGGGCGCCGGAG 8897 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 |||| || ||||| || ||| | || | |||| |||||| | | | | |||||||| Sbjct 8898 GAATTCCAGTTAAGTCGAATTTGCCCAATAAATGGTTATCTTTAGTCATGGGACGTTCAC 8957 Query 6825 CTTCA 6829 ||||| Sbjct 8958 CTTCA 8962 >seq10189 Length=230568 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11449 TTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAAT 11508 |||||||| ||||||||||| || ||||| |||||||||||||||| ||||| || || Sbjct 42866 TTACCAATAGCATCAATTTCGTCCATAAAAATAATACACGGTTGATGATCACGAGCGAAA 42807 Query 11509 TCAAATATATCACGGA 11524 | ||| || ||||||| Sbjct 42806 TTAAACATTTCACGGA 42791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635015784720760