Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13894 174 3e-38 seq12471 138 3e-27 seq7061 86.0 1e-11 >seq13894 Length=1211295 Score = 174 bits (192), Expect = 3e-38 Identities = 174/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| | || |||||| | || ||||| || || || || || |||||||||| |||| | Sbjct 231495 TCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAG-G 231553 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 ||| |||||||| | ||||| || || || || | ||||||||||| || || |||| Sbjct 231554 TTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGC 231613 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||||||||| || ||||| |||||| ||||||||||||||||| ||| ||||| | Sbjct 231614 CTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGA 231673 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| |||||||| || |||||||| ||||| | ||||| Sbjct 231674 GGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 150 bits (166), Expect = 4e-31 Identities = 163/212 (77%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTT-TGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||||| ||||| || || || ||| || || |||||||| | |||| |||| ||||||| Sbjct 231736 ACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAG-GTTCGGCCATCTT 231794 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | || || ||||| || ||||| | || || || || |||||||||||||||||||||| Sbjct 231795 CCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTT 231854 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | ||||| ||| ||||| || || || || ||| ||| |||||||| || | |||| Sbjct 231855 GGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGTCT 231914 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || |||||||| ||||| | |||||| Sbjct 231915 TCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 150 bits (166), Expect = 4e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| ||||| || |||||||| || || |||||||||| |||| || | |||||||| Sbjct 231965 ACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAG-GTCCGGCCATCTTC 232023 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || |||||||| | |||||| || ||||| || ||||| ||||||||||| Sbjct 232024 CAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTG 232083 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||| ||||| ||||||||||| || ||| ||||| | || | || || Sbjct 232084 GATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTT 232143 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| || || | ||||| Sbjct 232144 TCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 >seq12471 Length=105862 Score = 138 bits (152), Expect = 3e-27 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | ||| || |||||||| ||||| || ||||||||| | || | Sbjct 72150 AGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGA 72209 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| ||||| || ||||| || ||||| | ||| |||||||| || ||||| || ||| Sbjct 72210 CCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCT 72269 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 |||||||| || || |||||| || ||||||||||| |||| || ||||| | Sbjct 72270 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTC---ACTTGGCTCGACTTCCAAT 72326 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| ||||| || || | ||||| Sbjct 72327 GTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || ||||| ||||| ||||| ||| | ||| | |||||||| | || Sbjct 73427 GTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCCAATTG 73486 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| | || ||||| ||||||||||| |||||||||||||| || || Sbjct 73487 TTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGGATCTT 73546 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 || || ||||||||||| || |||| || ||||| | ||||| || ||||| Sbjct 73547 GGCTTTCACATTCTCAATGGTATC---ACTTGGCTCGACTTCCAAGGTAATGGTTTTTCC 73603 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||| ||||| | |||||| Sbjct 73604 AGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | ||||| || || ||||| ||||| ||||||||| ||| || | |||||| Sbjct 72901 AAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCT 72960 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || || || || ||||| || || ||||| ||||| || || |||||||||||| Sbjct 72961 TCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCT 73020 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || ||||| || || || ||||| | || ||||| | || | ||| Sbjct 73021 TGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTC 73080 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| ||||| | |||||| Sbjct 73081 TTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 113 bits (124), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| ||||| ||||| ||||| ||| | ||| | ||||| || | ||| Sbjct 72392 GTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCCAACTG 72451 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || || || || || ||||| || || || || ||||| || ||||||||||| Sbjct 72452 TTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTT 72511 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 || || ||||| || ||||| ||| || ||||| || |||| |||||||| Sbjct 72512 AGCTTTTACATTCTCGATCGTGTC---GCTTGGCTCAACTTCGAGAGTAATGGTCTTTCC 72568 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||| || || | ||||| Sbjct 72569 AGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 111 bits (122), Expect = 3e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| || | || | || || ||||| || || ||||| ||| ||| || | || Sbjct 73644 CTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCG 73703 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 |||||||||||||| || ||||| || | ||| ||||| || |||||||| ||||| || Sbjct 73704 TCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTA 73763 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTA 195102 || ||||| || ||| |||||||| || ||||| ||| ||||| || | ||| Sbjct 73764 TCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTC---GCTTGGCTCCACCTCCAAAGTA 73820 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || | ||||| || || | ||||| Sbjct 73821 ATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| || || ||||||||| || || | |||||||| | || Sbjct 73137 GTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTG 73196 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | || ||||| || |||||||| ||||||||||||||||| || Sbjct 73197 TTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTT 73256 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 || || ||||| || ||||| ||| || ||||| || |||| || ||||| Sbjct 73257 GGCTTTTACATTCTCGATAGTGTC---GCTTGGCTCAACTTCGAGCGTAATAGTTTTTCC 73313 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | ||||| Sbjct 73314 AGTGAGGGTTTTGACAAAAATCTGCAT 73340 >seq7061 Length=6671 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||| || ||||||||||| | ||| | | ||||||| | ||| ||||| || ||| Sbjct 2953 TCTTTCTGTATATTGTAATCTTCGAGACGTTTTTCATCTTCTAACTGTTTACCAGCAAAG 2894 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | || ||| ||||| || | || |||||||| |||||||| |||| |||| | Sbjct 2893 ATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTTGATATAT 2834 Query 195070 TCAATGGTGTCCGAA 195084 | ||||| |||||| Sbjct 2833 TTGATGGTATCCGAA 2819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109272081680813