Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 174 3e-38
seq12471 138 3e-27
seq7061 86.0 1e-11
>seq13894
Length=1211295
Score = 174 bits (192), Expect = 3e-38
Identities = 174/223 (78%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977
||| | || |||||| | || ||||| || || || || || |||||||||| |||| |
Sbjct 231495 TCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAG-G 231553
Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037
||| |||||||| | ||||| || || || || | ||||||||||| || || ||||
Sbjct 231554 TTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGC 231613
Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097
|||||||||| || ||||| |||||| ||||||||||||||||| ||| ||||| |
Sbjct 231614 CTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGA 231673
Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||| |||||||| || |||||||| ||||| | |||||
Sbjct 231674 GGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 150 bits (166), Expect = 4e-31
Identities = 163/212 (77%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTT-TGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||||| ||||| || || || ||| || || |||||||| | |||| |||| |||||||
Sbjct 231736 ACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAG-GTTCGGCCATCTT 231794
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
| || || ||||| || ||||| | || || || || ||||||||||||||||||||||
Sbjct 231795 CCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTT 231854
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
| ||||| ||| ||||| || || || || ||| ||| |||||||| || | ||||
Sbjct 231855 GGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGTCT 231914
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
| || || |||||||| ||||| | ||||||
Sbjct 231915 TCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 150 bits (166), Expect = 4e-31
Identities = 161/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
||||| ||||| || |||||||| || || |||||||||| |||| || | ||||||||
Sbjct 231965 ACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAG-GTCCGGCCATCTTC 232023
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||||| || |||||||| | |||||| || ||||| || ||||| |||||||||||
Sbjct 232024 CAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTG 232083
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||||| ||| ||||| ||||||||||| || ||| ||||| | || | || ||
Sbjct 232084 GATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTT 232143
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || || ||||| || || | |||||
Sbjct 232144 TCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
>seq12471
Length=105862
Score = 138 bits (152), Expect = 3e-27
Identities = 164/221 (74%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|| |||||||| | ||| || |||||||| ||||| || ||||||||| | || |
Sbjct 72150 AGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGA 72209
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||| ||||| || ||||| || ||||| | ||| |||||||| || ||||| || |||
Sbjct 72210 CCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCT 72269
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099
|||||||| || || |||||| || ||||||||||| |||| || ||||| |
Sbjct 72270 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTC---ACTTGGCTCGACTTCCAAT 72326
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || |||| ||||| || || | |||||
Sbjct 72327 GTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 138 bits (152), Expect = 3e-27
Identities = 156/208 (75%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||||||||| || ||||| ||||| ||||| ||| | ||| | |||||||| | ||
Sbjct 73427 GTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCCAATTG 73486
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||||| |||||||| | || ||||| ||||||||||| |||||||||||||| || ||
Sbjct 73487 TTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGGATCTT 73546
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113
|| || ||||||||||| || |||| || ||||| | ||||| || |||||
Sbjct 73547 GGCTTTCACATTCTCAATGGTATC---ACTTGGCTCGACTTCCAAGGTAATGGTTTTTCC 73603
Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141
|| | ||||| ||||| | ||||||
Sbjct 73604 AGTGAGTGTTTTGACGAAGATCTGCATT 73631
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988
||||| | ||||| || || ||||| ||||| ||||||||| ||| || | ||||||
Sbjct 72901 AAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCT 72960
Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
||||| || || || || ||||| || || ||||| ||||| || || ||||||||||||
Sbjct 72961 TCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCT 73020
Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108
|| || || ||||| || || || ||||| | || ||||| | || | |||
Sbjct 73021 TGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTC 73080
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| ||||| ||||| | ||||||
Sbjct 73081 TTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 113 bits (124), Expect = 1e-19
Identities = 150/207 (72%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| ||||| ||||| ||||| ||||| ||| | ||| | ||||| || | |||
Sbjct 72392 GTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCCAACTG 72451
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||||| || || || || || ||||| || || || || ||||| || |||||||||||
Sbjct 72452 TTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTT 72511
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113
|| || ||||| || ||||| ||| || ||||| || |||| ||||||||
Sbjct 72512 AGCTTTTACATTCTCGATCGTGTC---GCTTGGCTCAACTTCGAGAGTAATGGTCTTTCC 72568
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||||| || || | |||||
Sbjct 72569 AGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 111 bits (122), Expect = 3e-19
Identities = 156/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985
||||| || | || | || || ||||| || || ||||| ||| ||| || | ||
Sbjct 73644 CTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCG 73703
Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045
|||||||||||||| || ||||| || | ||| ||||| || |||||||| ||||| ||
Sbjct 73704 TCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTA 73763
Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTA 195102
|| ||||| || ||| |||||||| || ||||| ||| ||||| || | |||
Sbjct 73764 TCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTC---GCTTGGCTCCACCTCCAAAGTA 73820
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || ||||| || | ||||| || || | |||||
Sbjct 73821 ATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
Score = 109 bits (120), Expect = 1e-18
Identities = 149/207 (72%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || || ||||| || || ||||||||| || || | |||||||| | ||
Sbjct 73137 GTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTG 73196
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || ||||| || | || ||||| || |||||||| ||||||||||||||||| ||
Sbjct 73197 TTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTT 73256
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113
|| || ||||| || ||||| ||| || ||||| || |||| || |||||
Sbjct 73257 GGCTTTTACATTCTCGATAGTGTC---GCTTGGCTCAACTTCGAGCGTAATAGTTTTTCC 73313
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || || | |||||
Sbjct 73314 AGTGAGGGTTTTGACAAAAATCTGCAT 73340
>seq7061
Length=6671
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009
||||| || ||||||||||| | ||| | | ||||||| | ||| ||||| || |||
Sbjct 2953 TCTTTCTGTATATTGTAATCTTCGAGACGTTTTTCATCTTCTAACTGTTTACCAGCAAAG 2894
Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069
|| | || ||| ||||| || | || |||||||| |||||||| |||| |||| |
Sbjct 2893 ATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTTGATATAT 2834
Query 195070 TCAATGGTGTCCGAA 195084
| ||||| ||||||
Sbjct 2833 TTGATGGTATCCGAA 2819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109272081680813
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