Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 120 2e-22
>seq12471
Length=105862
Score = 120 bits (132), Expect = 2e-22
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813
|| || |||||||| | |||||||||| ||| ||||||||||||||| ||||| |
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873
|| | | || |||| |||| |||||| |||||||| || || || || || || | ||
Sbjct 72429 AAAG-TGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487
Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCA 34931
| || ||||| || ||| || ||| || || || |||| || | | ||||
Sbjct 72488 GATTCCTTCCTTATCTTGAATTTTAGCTTTTAC--ATTCTCGATCGTGTCGCTTGGCTCA 72545
Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| |||| || ||||| ||||| || ||||| || |||||||||||||||
Sbjct 72546 ACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCATA 72596
Score = 95.1 bits (104), Expect = 8e-15
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831
|||||||||| || ||||||||||||||| ||||| | || | | || |||| ||
Sbjct 73422 ACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAG-TGCGACCATCTTC 73480
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| ||||| ||||| || || | || || || ||| | || | ||| || |||||
Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540
Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||| ||| || || || || | |||| | ||| || || | ||| ||||||
Sbjct 73541 GATCTTGGCTTTCAC--ATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTT 73598
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| ||||| || || || |||||||||||
Sbjct 73599 TTTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829
|||||||| |||| || ||||||||||||||| || || ||| | || ||||
Sbjct 72901 AAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCT 72960
Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889
|| || ||||| || ||||| ||||| || || || ||| | || | ||| || |||||
Sbjct 72961 TCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCT 73020
Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||| |||||| | | || | |||| | ||| || || | || |||||
Sbjct 73021 TGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTC 73080
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || || || || || ||||| ||||||
Sbjct 73081 TTGCCAGTCAGGGTTTTGACGAAGATTTGCATA 73113
Score = 84.2 bits (92), Expect = 1e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTT 34824
||||||||||||||| | ||| || || || ||||| || || | || | | ||
Sbjct 72152 CCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATG-TGCGAC 72210
Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884
|||| || || ||||| || ||||| || | ||| || ||||| |||| | ||||| |
Sbjct 72211 CATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTT 72270
Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944
|||| ||||| ||||| | | || | |||| | ||| || || | || |
Sbjct 72271 TGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGA 72330
Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|||| || || || || || || |||||||||||||||
Sbjct 72331 TGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATA 72368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324575285559192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |