Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13338 147 2e-30 seq13941 107 2e-18 seq12995 105 8e-18 >seq13338 Length=646138 Score = 147 bits (162), Expect = 2e-30 Identities = 237/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || ||||| ||| || || || || |||||||| || | ||| | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||| ||||| || || ||||| || |||||||| || |||||||| || ||||||| Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | | | || || || | | || || || ||||| | || ||||| | Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATAC-GCTCATCT 19221 ||||||| ||||||||||| ||||| || | || || | ||| | | ||||| Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATC- 454259 Query 19222 GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281 || |||| | || | || |||||| | |||||||| || ||||| ||||| || || Sbjct 454260 GTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319 Query 19282 GCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || || || ||||| |||||| | | ||||| || || Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGAT 454357 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCT---CTTCATTAGAATTCATTACTCC-CA 18667 |||||||||| | || | || |||| | || || | || |||||| || || || Sbjct 453517 TTAAAAATCAGCTTCGAGAGTAAAAACGTGCTGGTCTCCCGTACGATTCATAACCCCGCA 453576 Query 18668 TTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATAC 18727 ||| | |||||| ||||| |||| || |||||||| || || ||||| || |||||| Sbjct 453577 TTTCGCG-TATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTCCAAAGATATAT 453635 Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 |||||||||||||||||||||| |||||||| || Sbjct 453636 TCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672 >seq13941 Length=98454 Score = 107 bits (118), Expect = 2e-18 Identities = 233/345 (68%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || ||||||||||| || || || |||||||| || |||| ||||| Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCGTTTTTC- 98321 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| || || || || || || || || || || || ||||| || || || ||||| Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 || | || || || | | || || || ||||| | || ||||| ||| Sbjct 98260 ACAACTCGCTCGCCGAACGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACGCC 98201 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCT-CATCTGT 19223 ||||| || || || || ||||| || | |||||| | || |||| |||| | Sbjct 98200 TTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCATC-GA 98142 Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 || | || || | || ||||| | |||||||||||| || || | || || || Sbjct 98141 GTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGATCAT 98082 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| |||||||||||| ||| ||||| || || || || || Sbjct 98081 GATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTC 98037 >seq12995 Length=433444 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 19288 TGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC 19347 ||||| || |||||||| || ||||||| || |||||||| || |||||||| || Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCACT 320997 Query 19348 AAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAA 19407 |||||||||||||| ||||||||||| || |||||||| || || | || | ||||| Sbjct 320996 AAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAAC 320937 Query 19408 TGTTTTTC 19415 |||||| Sbjct 320936 ATTTTTTC 320929 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 |||||||| | || | |||||| || || ||||||||||||| || || ||||| Sbjct 321914 TCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTTTC 321855 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 ||||| || || ||||||||||| || ||||| || ||||| || |||||||| || Sbjct 321854 AACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATGCG 321795 Query 19105 ACTAGTCTTTCTCCATAA 19122 |||| ||| || ||| || Sbjct 321794 ACTAATCTATCGCCAAAA 321777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562005238479960