Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 147 2e-30
seq13941 107 2e-18
seq12995 105 8e-18
>seq13338
Length=646138
Score = 147 bits (162), Expect = 2e-30
Identities = 237/338 (70%), Gaps = 2/338 (1%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||||||||| || || ||||| ||| || || || || |||||||| || | ||| |
Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
||| ||| ||||| || || ||||| || |||||||| || |||||||| || |||||||
Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162
| | | || || || | | || || || ||||| | || ||||| |
Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200
Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATAC-GCTCATCT 19221
||||||| ||||||||||| ||||| || | || || | ||| | | |||||
Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATC- 454259
Query 19222 GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281
|| |||| | || | || |||||| | |||||||| || ||||| ||||| || ||
Sbjct 454260 GTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319
Query 19282 GCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319
|| || || ||||| |||||| | | ||||| || ||
Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGAT 454357
Score = 98.7 bits (108), Expect = 1e-15
Identities = 118/157 (75%), Gaps = 5/157 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCT---CTTCATTAGAATTCATTACTCC-CA 18667
|||||||||| | || | || |||| | || || | || |||||| || || ||
Sbjct 453517 TTAAAAATCAGCTTCGAGAGTAAAAACGTGCTGGTCTCCCGTACGATTCATAACCCCGCA 453576
Query 18668 TTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATAC 18727
||| | |||||| ||||| |||| || |||||||| || || ||||| || ||||||
Sbjct 453577 TTTCGCG-TATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTCCAAAGATATAT 453635
Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764
|||||||||||||||||||||| |||||||| ||
Sbjct 453636 TCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672
>seq13941
Length=98454
Score = 107 bits (118), Expect = 2e-18
Identities = 233/345 (68%), Gaps = 3/345 (1%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || ||||||||||| || || || |||||||| || |||| |||||
Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCGTTTTTC- 98321
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||| || || || || || || || || || || || ||||| || || || |||||
Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261
Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164
|| | || || || | | || || || ||||| | || ||||| |||
Sbjct 98260 ACAACTCGCTCGCCGAACGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACGCC 98201
Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCT-CATCTGT 19223
||||| || || || || ||||| || | |||||| | || |||| |||| |
Sbjct 98200 TTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCATC-GA 98142
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
|| | || || | || ||||| | |||||||||||| || || | || || ||
Sbjct 98141 GTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGATCAT 98082
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
||||| |||||||||||| ||| ||||| || || || || ||
Sbjct 98081 GATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTC 98037
>seq12995
Length=433444
Score = 105 bits (116), Expect = 8e-18
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 19288 TGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC 19347
||||| || |||||||| || ||||||| || |||||||| || |||||||| ||
Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCACT 320997
Query 19348 AAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAA 19407
|||||||||||||| ||||||||||| || |||||||| || || | || | |||||
Sbjct 320996 AAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAAC 320937
Query 19408 TGTTTTTC 19415
||||||
Sbjct 320936 ATTTTTTC 320929
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|||||||| | || | |||||| || || ||||||||||||| || || |||||
Sbjct 321914 TCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTTTC 321855
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
||||| || || ||||||||||| || ||||| || ||||| || |||||||| ||
Sbjct 321854 AACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATGCG 321795
Query 19105 ACTAGTCTTTCTCCATAA 19122
|||| ||| || ||| ||
Sbjct 321794 ACTAATCTATCGCCAAAA 321777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562005238479960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |