Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 113 4e-19
seq13894 107 2e-17
seq14046 95.1 1e-13
seq14178 91.5 1e-12
seq12593 91.5 1e-12
seq13235 86.0 5e-11
seq7061 86.0 5e-11
>seq12471
Length=105862
Score = 113 bits (124), Expect = 4e-19
Identities = 151/209 (72%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326
|||| |||||||| |||||| ||| ||||| || || ||| | ||| || |
Sbjct 72389 CAAG-TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCCA 72447
Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386
||||| ||||||||||| || | || ||||| || || |||||||| ||||||||||
Sbjct 72448 ACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGAA 72507
Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446
|||| |||||| ||| || || || | | | ||||||||||| || || |
Sbjct 72508 TTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTTTC 72567
Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||||||||||||| || || || ||||||
Sbjct 72568 CAGTAAGAGTTTTGACAAAGATCTGCATA 72596
Score = 89.7 bits (98), Expect = 4e-12
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379
||||| || || ||||| || ||||| | || || ||||| |||||||||||||| |||
Sbjct 73704 TCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTA 73763
Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438
|| ||||| || || || ||| || || || | || | || || | |||||
Sbjct 73764 TCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTTGGCTCCACCTCCAAAGTAAT 73822
Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| || |||||||| ||||| |||||
Sbjct 73823 AGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
>seq13894
Length=1211295
Score = 107 bits (118), Expect = 2e-17
Identities = 158/219 (72%), Gaps = 5/219 (2%)
Strand=Plus/Plus
Query 563259 ACGGAGTACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317
||| || |||||||||||||| || |||| || |||||||| | | ||||
Sbjct 231729 ACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGC 231788
Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377
|||||| |||||||| |||||||| || | | |||||||| |||||||| |||||||
Sbjct 231789 CATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTT 231848
Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGT 563435
| ||||| ||||| || || || |||||||| | || | || ||| || ||
Sbjct 231849 TGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCG-AC-TTCAAGCGT 231906
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || || ||||| | |||||| |||||||| |||||
Sbjct 231907 GATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 93.3 bits (102), Expect = 3e-13
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318
||| | ||| ||||||||||| ||| || || ||||| || | || ||||
Sbjct 232186 ACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCC 232245
Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378
|||||| | ||| || || |||||||| | || ||||||||| || || || ||||||||
Sbjct 232246 ATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTT 232305
Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438
||| || ||||| || || ||||| ||||| | | ||||||||| |
Sbjct 232306 ATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTAT 232365
Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| ||||| || | ||||| || ||||| |||||
Sbjct 232366 GGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401
Score = 87.8 bits (96), Expect = 1e-11
Identities = 154/220 (70%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 563259 ACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||| ||||||||||||||||| ||| | | ||| || |||||||| | | || |
Sbjct 231958 ACGCAGTACAAGATGAAGGGTTGACTCTTTCTGG--ATGTTGTAATCGGACAAGGTCCGG 232015
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||| | ||| ||||| || || || | || ||||||||| || || || || |||
Sbjct 232016 CCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCT 232075
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435
|| ||||| ||||| || || ||||| || || | || || ||| | |||
Sbjct 232076 TTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGAC-TTCCAAAGT 232134
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
| ||||| ||||| | ||||| || ||||| ||||||
Sbjct 232135 GATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCATA 232174
>seq14046
Length=357214
Score = 95.1 bits (104), Expect = 1e-13
Identities = 128/178 (72%), Gaps = 3/178 (2%)
Strand=Plus/Minus
Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085
|||||||||| | | || || || || |||||||||||||||||||| ||| | |
Sbjct 10553 GTGTTGGTGTGTTTAAGAACGGGCGTGTAGAGATTATTGCCAATGATCAAGGCAACCGCA 10494
Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142
||||| || || || |||| || |||| |||| | || |||| ||||| || |
Sbjct 10493 TCACTCCTTCATACGTGGCTTTTACTCCGGAAGGAGAACGTCTAATTGGAGATGCCGCGA 10434
Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGG 550200
|| ||||| ||| ||||||| || || |||| ||||||||||| ||||| ||
Sbjct 10433 AAAATCAATTGACTAGTAATCCCGAAAACACGGTTTTCGATGCTAAACGATTAATCGG 10376
>seq14178
Length=603277
Score = 91.5 bits (100), Expect = 1e-12
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 393992 TCAATGTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGT 394051
||||||||| ||| ||||| ||| |||||||||||| ||||| ||||
Sbjct 43818 TCAATGTTAAACGGTGTGACAATCTCAGGAAATGTTAAATTTTGAGCAATTGAACGTGGA 43759
Query 394052 AGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATA 394111
| ||| |||| || | | || ||| ||||| | || || || || || |||| |
Sbjct 43758 ACTCCAACTTGATCGATACGAAGATTCGGATCTGGTGTGATGACAGTTCGTGCTGAGAAG 43699
Query 394112 TCCACACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTTACCT 394159
|| || ||||||||||| | ||||||||||||||| |||||||| |||
Sbjct 43698 TCAACTCGTTTTCCCATTAAATTTCCACGAATTCTTCCTTCTTTTCCT 43651
>seq12593
Length=225266
Score = 91.5 bits (100), Expect = 1e-12
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725
|||||||| || ||||||||||| ||||| |||||| |||| |||||||| || || |||
Sbjct 76287 GATTTTTCATCGCCAAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGCTCAACGATT 76228
Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785
|| || || | | ||| || | ||| | | ||| ||| ||| | | |||
Sbjct 76227 ATCGGTGATAGTATTTGTCGAGTTCTTGAGTTTGTTGGTCATAATGTTACCAGGATTAAT 76168
Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTAT 930830
|| | ||||| ||||| || ||||| || ||| |||||||| ||
Sbjct 76167 CACGTCGGTGACTGGGGCACGCAATTCGGCATGCTAATTGCTCAT 76123
>seq13235
Length=296648
Score = 86.0 bits (94), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| || || || || ||||| ||||| || |||||||||||||| ||||| ||||||||
Sbjct 66999 GGAATCCCGCCAGCACCTCGCGGAGTTCCTCAAATTGAAGTTACGTTCGACATCGATGCT 67058
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
||||| || ||||| ||| |||| ||||||
Sbjct 67059 AATGGTATCTTGAACGTGTCTGCAGTTGATAA 67090
>seq7061
Length=6671
Score = 86.0 bits (94), Expect = 5e-11
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 563282 TTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAA 563341
||||||| ||||||||||| | ||| | || |||||| | ||||| || ||||
Sbjct 2955 TTTCTTTCTGTATATTGTAATCTTCGAGACGTTTTTCATCTTCTAACTGTTTACCAGCAA 2896
Query 563342 AAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTT 563396
| || | ||||||||| || || | |||||||||||||||||||| |||| |||
Sbjct 2895 AGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTT 2841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028516535207110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |