Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12471 113 4e-19 seq13894 107 2e-17 seq14046 95.1 1e-13 seq14178 91.5 1e-12 seq12593 91.5 1e-12 seq13235 86.0 5e-11 seq7061 86.0 5e-11 >seq12471 Length=105862 Score = 113 bits (124), Expect = 4e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| |||||| ||| ||||| || || ||| | ||| || | Sbjct 72389 CAAG-TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCCA 72447 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||||| ||||||||||| || | || ||||| || || |||||||| |||||||||| Sbjct 72448 ACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGAA 72507 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 |||| |||||| ||| || || || | | | ||||||||||| || || | Sbjct 72508 TTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTTTC 72567 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||||||||||| || || || |||||| Sbjct 72568 CAGTAAGAGTTTTGACAAAGATCTGCATA 72596 Score = 89.7 bits (98), Expect = 4e-12 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||| || || ||||| || ||||| | || || ||||| |||||||||||||| ||| Sbjct 73704 TCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTA 73763 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438 || ||||| || || || ||| || || || | || | || || | ||||| Sbjct 73764 TCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTTGGCTCCACCTCCAAAGTAAT 73822 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| || |||||||| ||||| ||||| Sbjct 73823 AGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 >seq13894 Length=1211295 Score = 107 bits (118), Expect = 2e-17 Identities = 158/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317 ||| || |||||||||||||| || |||| || |||||||| | | |||| Sbjct 231729 ACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGC 231788 Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 |||||| |||||||| |||||||| || | | |||||||| |||||||| ||||||| Sbjct 231789 CATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTT 231848 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGT 563435 | ||||| ||||| || || || |||||||| | || | || ||| || || Sbjct 231849 TGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCG-AC-TTCAAGCGT 231906 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| | |||||| |||||||| ||||| Sbjct 231907 GATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 93.3 bits (102), Expect = 3e-13 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 ||| | ||| ||||||||||| ||| || || ||||| || | || |||| Sbjct 232186 ACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCC 232245 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| | ||| || || |||||||| | || ||||||||| || || || |||||||| Sbjct 232246 ATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTT 232305 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438 ||| || ||||| || || ||||| ||||| | | ||||||||| | Sbjct 232306 ATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTAT 232365 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || | ||||| || ||||| ||||| Sbjct 232366 GGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401 Score = 87.8 bits (96), Expect = 1e-11 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||| ||||||||||||||||| ||| | | ||| || |||||||| | | || | Sbjct 231958 ACGCAGTACAAGATGAAGGGTTGACTCTTTCTGG--ATGTTGTAATCGGACAAGGTCCGG 232015 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | ||| ||||| || || || | || ||||||||| || || || || ||| Sbjct 232016 CCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCT 232075 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || ||||| ||||| || || ||||| || || | || || ||| | ||| Sbjct 232076 TTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGAC-TTCCAAAGT 232134 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| ||||| | ||||| || ||||| |||||| Sbjct 232135 GATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCATA 232174 >seq14046 Length=357214 Score = 95.1 bits (104), Expect = 1e-13 Identities = 128/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||| | | || || || || |||||||||||||||||||| ||| | | Sbjct 10553 GTGTTGGTGTGTTTAAGAACGGGCGTGTAGAGATTATTGCCAATGATCAAGGCAACCGCA 10494 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 ||||| || || || |||| || |||| |||| | || |||| ||||| || | Sbjct 10493 TCACTCCTTCATACGTGGCTTTTACTCCGGAAGGAGAACGTCTAATTGGAGATGCCGCGA 10434 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGG 550200 || ||||| ||| ||||||| || || |||| ||||||||||| ||||| || Sbjct 10433 AAAATCAATTGACTAGTAATCCCGAAAACACGGTTTTCGATGCTAAACGATTAATCGG 10376 >seq14178 Length=603277 Score = 91.5 bits (100), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 393992 TCAATGTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGT 394051 ||||||||| ||| ||||| ||| |||||||||||| ||||| |||| Sbjct 43818 TCAATGTTAAACGGTGTGACAATCTCAGGAAATGTTAAATTTTGAGCAATTGAACGTGGA 43759 Query 394052 AGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATA 394111 | ||| |||| || | | || ||| ||||| | || || || || || |||| | Sbjct 43758 ACTCCAACTTGATCGATACGAAGATTCGGATCTGGTGTGATGACAGTTCGTGCTGAGAAG 43699 Query 394112 TCCACACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTTACCT 394159 || || ||||||||||| | ||||||||||||||| |||||||| ||| Sbjct 43698 TCAACTCGTTTTCCCATTAAATTTCCACGAATTCTTCCTTCTTTTCCT 43651 >seq12593 Length=225266 Score = 91.5 bits (100), Expect = 1e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 |||||||| || ||||||||||| ||||| |||||| |||| |||||||| || || ||| Sbjct 76287 GATTTTTCATCGCCAAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGCTCAACGATT 76228 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785 || || || | | ||| || | ||| | | ||| ||| ||| | | ||| Sbjct 76227 ATCGGTGATAGTATTTGTCGAGTTCTTGAGTTTGTTGGTCATAATGTTACCAGGATTAAT 76168 Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTAT 930830 || | ||||| ||||| || ||||| || ||| |||||||| || Sbjct 76167 CACGTCGGTGACTGGGGCACGCAATTCGGCATGCTAATTGCTCAT 76123 >seq13235 Length=296648 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || || || ||||| ||||| || |||||||||||||| ||||| |||||||| Sbjct 66999 GGAATCCCGCCAGCACCTCGCGGAGTTCCTCAAATTGAAGTTACGTTCGACATCGATGCT 67058 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || ||||| ||| |||| |||||| Sbjct 67059 AATGGTATCTTGAACGTGTCTGCAGTTGATAA 67090 >seq7061 Length=6671 Score = 86.0 bits (94), Expect = 5e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 563282 TTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAA 563341 ||||||| ||||||||||| | ||| | || |||||| | ||||| || |||| Sbjct 2955 TTTCTTTCTGTATATTGTAATCTTCGAGACGTTTTTCATCTTCTAACTGTTTACCAGCAA 2896 Query 563342 AAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTT 563396 | || | ||||||||| || || | |||||||||||||||||||| |||| ||| Sbjct 2895 AGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTT 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028516535207110