Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq13941 98.7 1e-15
seq12995 89.7 6e-13
seq13338 87.8 2e-12
>seq13941
Length=98454
Score = 98.7 bits (108), Expect = 1e-15
Identities = 98/126 (78%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || ||||||||||| || || ||||| ||||| | ||||| ||||
Sbjct 98381 CTTCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTC-GTTTT 98323
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| |||||||| || | || ||||| || || || ||||| |||||||| || || || |
Sbjct 98322 TCATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAG 98263
Query 37318 CTACAA 37323
||||||
Sbjct 98262 CTACAA 98257
>seq12995
Length=433444
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||| ||||| | || | |||||| || || || || ||||| ||||| || ||||
Sbjct 321916 CTTCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTT 321857
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | |||||| || | ||||| ||||| || |||||||| ||||| || ||||||||||
Sbjct 321856 TCAACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATG 321797
Query 37318 CTAC 37321
| ||
Sbjct 321796 CGAC 321793
>seq13338
Length=646138
Score = 87.8 bits (96), Expect = 2e-12
Identities = 226/342 (66%), Gaps = 2/342 (1%)
Strand=Plus/Plus
Query 37188 CAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAA 37247
|||| ||| | || ||||| || || ||||| ||| || || ||||| ||||| | |
Sbjct 454011 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 454070
Query 37248 CCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACT 37307
|| | ||| || | ||||||||||| || || || || |||||||| || ||||| ||
Sbjct 454071 CCGCGTTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 454130
Query 37308 GCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAttttttt 37367
|| ||||| || | | || ||||| || | | | | ||||| |
Sbjct 454131 GCCGCAAAAGCGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGA 454190
Query 37368 GTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttt 37427
| ||| ||||| |||||| || || || || || || || | | |||||
Sbjct 454191 GCCCACAACGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTT 454250
Query 37428 -ttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAAT 37486
||||| || | ||| || ||||||| || | | || ||||| || || || ||
Sbjct 454251 CTTTTCATC-GTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGAT 454309
Query 37487 ATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528
||| ||||| || || || || ||||||||| | | ||||||
Sbjct 454310 ATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351
Score = 86.0 bits (94), Expect = 7e-12
Identities = 81/101 (80%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 36865 TACTATTCATAACTCC-CATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTC 36923
||| ||||||||| || ||||| | ||||| |||||| | | ||||| ||||| |||
Sbjct 453558 TACGATTCATAACCCCGCATTTCGCG-TATTCGCCAACTTTTTTCTCGAAGAAATTCGTC 453616
Query 36924 TTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
|| || || | |||||||| ||||||||||||||||||||
Sbjct 453617 TTGCCCTCCAAAGATATATTCTCCATAAAATCAAATGGATT 453657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592207673033560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |