Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 170 2e-37
seq12471 152 4e-32
seq7061 96.9 3e-15
>seq13894
Length=1211295
Score = 170 bits (188), Expect = 2e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| ||||| || || ||||| ||||| || || ||||| || || || ||||||||||
Sbjct 231488 TTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGG 231547
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| |||| | |||| ||||||||||| || ||||| || ||||| ||||| ||||| |
Sbjct 231548 ACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTG 231607
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| ||||||||||| || || ||||| || ||| | || | ||||| || | ||| |
Sbjct 231608 GGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGA 231667
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||| || || | || || |||||||||||||| || || ||||||||
Sbjct 231668 CTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 168 bits (186), Expect = 5e-37
Identities = 175/228 (77%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTT-TGTATATTGTAATCGGC 101301
|| ||||| ||||| | || | ||||||||| ||||| ||| || || |||||||| |
Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777
Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361
| |||| | |||| |||| ||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837
Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421
|||||||||||| ||||| ||||| || || |||| | || || || | ||| ||
Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897
Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| |||| || || || ||||||||||| || || ||||||||
Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 161 bits (178), Expect = 8e-35
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| ||||| ||||| | || | ||||||||| || ||||| || || ||||||||||
Sbjct 231945 TTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGG 232004
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| || | | |||| ||||||||||| || || || ||||| || || ||||| || |
Sbjct 232005 ACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTG 232064
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| ||||| ||||| ||||| ||||| || || |||| | ||||| || | ||| |
Sbjct 232065 GGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGA 232124
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||| | ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 232125 CTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||||||||| || || | ||||||||| ||||| || || || ||||| ||||
Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| |||| | |||| ||||||||||| || ||||| || || || || ||||| || ||
Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||||||||| || ||||| || || |||| | || || || | || |||
Sbjct 232295 ATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACT 232354
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| | || || |||||||| ||||| ||||| ||||||||
Sbjct 232355 TCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401
>seq12471
Length=105862
Score = 152 bits (168), Expect = 4e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| || | | || || |||||||| |||||||| || || ||||| |||
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | |||| ||||| || ||||| ||||| |||| ||||||||||||||| ||
Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| |||||||||||||| ||||||| | || | ||||| | || |||
Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACT 72548
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| | || || || || | |||||| ||||| ||||||||
Sbjct 72549 TCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| || | | || || ||||| || |||||||| || || ||||||||| |
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||||||| || || || || ||||||||||||||||| || |||
Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| |||||||| |||||||| || ||||||| | || | |||||| | || |||
Sbjct 73234 ATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACT 73293
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || | ||||| || || | ||||| ||||| ||||||||
Sbjct 73294 TCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| || || | ||| ||||| || || ||||| ||||| || |||||||||
Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||||||| || || || || ||||||||||||||||| || ||
Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || ||||||||||| || || ||| ||| |||| | |||||| | ||| ||
Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACC 72776
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| | ||||| || ||||| || || || || || || || ||||||
Sbjct 72777 TCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314
|||||||| |||||||| || |||||||| || || ||||||||| | || | ||
Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957
Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
|| || | ||| || || ||||| || | |||||||||||| || || || ||||||||
Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTG 73017
Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434
||||| || || ||| ||| |||| | ||||||| | || ||||| | ||||
Sbjct 73018 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATG 73077
Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || | ||||| || || || |||||
Sbjct 73078 GTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
||||| || || || || || || ||||| || ||||||||| | || | ||||
Sbjct 72156 AAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCC 72215
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|| | ||| ||||| ||||| ||||| |||||||| ||||||||||| || ||||| |||
Sbjct 72216 TCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTCT 72275
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| || || || ||| |||| | |||||| | || ||||| | |||| ||
Sbjct 72276 TGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGTC 72335
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || | ||||| ||||| ||||||||
Sbjct 72336 TTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || ||||| || |||||||| || || ||||| ||| | ||| | |||| |||
Sbjct 73422 ACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCC 73481
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
||||| ||||| || || ||||||||||||||||| || ||||| |||||||| |||||
Sbjct 73482 AATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 73541
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| | || | || ||| | || ||||| | || | |||||
Sbjct 73542 ATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTT 73601
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||||| || || ||||||||
Sbjct 73602 CCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
Score = 114 bits (126), Expect = 1e-20
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||||| || | || || ||||| | ||| |||||||| || || ||||| |||
Sbjct 73630 TTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGC 73689
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| || | | | || || | ||||| || || || ||||| |||||||||||||| |
Sbjct 73690 TAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAG 73749
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||| ||||| ||||| ||||| || || || | || | ||||| | ||||
Sbjct 73750 GAATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCA 73809
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
| || | ||| | ||||| || || | ||||| ||||| ||||||||| ||
Sbjct 73810 CCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATT 73862
>seq7061
Length=6671
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | ||| | ||| |||||||| | || |||||| |||||||||||||| ||
Sbjct 2989 CCACCGCGTAATCTTAATACTAAATGTAAAGTGTTTTCTTTCTGTATATTGTAATCTTCG 2930
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| | | | |||| || || || ||||| ||||| || || | || || || || |
Sbjct 2929 AGACGTTTTTCATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCT 2870
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||||||||||||||| |||| ||| | | || | || || || ||
Sbjct 2869 ATTCCTTCTTTATCTTGAATCTTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAA 2810
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCA 101468
|| | || | | ||| || ||||||||||| ||||| |||||||
Sbjct 2809 TCTATCGTTATGGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396207215891823
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