Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 109 5e-19
seq12471 91.5 1e-13
>seq13894
Length=1211295
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || || || ||||| ||||| || || ||||||||| |||| ||||| ||
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || ||||| |||||| |||||||| || | || || |||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| | | || |||||||| || |||||||||||| ||| || ||||||| |||
Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| || || ||||| |||||||| |||| || |||| |||| || ||
Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAAT 231487
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610
|||||||| || ||||| ||||| ||||| ||||| ||||| || |||| || |||
Sbjct 232404 AAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCT 232345
Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670
|| || ||| | | | | ||| |||||| || ||||| || | || |||
Sbjct 232344 TCCGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGAT 232285
Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730
|| || || | || ||||||||||| |||||||||||| ||| | |||| ||
Sbjct 232284 CAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTAC 232225
Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
||||| || || ||||| || || || ||||||| | ||| |||| || ||
Sbjct 232224 AACATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGGTAT 232172
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| ||||| ||||| || |||||||| || ||| ||||| |||
Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | ||| |||||| ||||||||||| | || ||||||
Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAG 232054
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| || | ||||| ||||| || |||||||||||| || || ||||||| |||
Sbjct 232053 CAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAAC 231994
Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756
|| || ||||| || || || ||
Sbjct 231993 ATCCAGAAAGAGTCAACCCTTCA 231971
>seq12471
Length=105862
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
|||||| || || || |||||| | || || |||||||||||| ||| || ||
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | || | || || ||| |||||||| || | || ||||||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|||| | | ||||| || || ||||||||||||||| | ||| || ||| || ||
Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762
|||||| |||||||| ||||| ||| ||||
Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGT 73422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425328383871081
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |