Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq13894 109 5e-19 seq12471 91.5 1e-13 >seq13894 Length=1211295 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| ||||| || || ||||||||| |||| ||||| || Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| |||||||| || | || || ||| Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || |||||||| || |||||||||||| ||| || ||||||| ||| Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || ||||| |||||||| |||| || |||| |||| || || Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAAT 231487 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || ||||| ||||| ||||| ||||| ||||| || |||| || ||| Sbjct 232404 AAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCT 232345 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || ||| | | | | ||| |||||| || ||||| || | || ||| Sbjct 232344 TCCGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGAT 232285 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || || || | || ||||||||||| |||||||||||| ||| | |||| || Sbjct 232284 CAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTAC 232225 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || ||||| || || || ||||||| | ||| |||| || || Sbjct 232224 AACATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGGTAT 232172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| ||||| || |||||||| || ||| ||||| ||| Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| |||||| ||||||||||| | || |||||| Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAG 232054 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | ||||| ||||| || |||||||||||| || || ||||||| ||| Sbjct 232053 CAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAAC 231994 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || ||||| || || || || Sbjct 231993 ATCCAGAAAGAGTCAACCCTTCA 231971 >seq12471 Length=105862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || |||||| | || || |||||||||||| ||| || || Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || ||| |||||||| || | || |||||| Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | ||||| || || ||||||||||||||| | ||| || ||| || || Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| |||||||| ||||| ||| |||| Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGT 73422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425328383871081