Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq13235 167 2e-35 seq13151 156 3e-32 seq12471 109 4e-18 seq14046 105 4e-17 seq12593 93.3 3e-13 seq14070 87.8 1e-11 seq13938 87.8 1e-11 >seq13235 Length=296648 Score = 167 bits (184), Expect = 2e-35 Identities = 346/509 (68%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 ||||| || |||| |||| | | || ||||||||| | ||| | || || |||||| Sbjct 66175 GAAGACGGCATTTTTGAAGTAAAATCGACCGCTGGAGATACCCATTTGGGCGGAGAAGAT 66234 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTG 475457 || ||||| || | || | ||| | ||| |||| |||||||| ||| | ||| | Sbjct 66235 TTCGATAACCGAATGGTCAACCAT--TTTGTACAAGAGTTCAAGAGAAAACACAAAAAGG 66292 Query 475458 ATCTTTCAACATCTGCTAAA---GCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTA 475514 || | || ||| ||| || | || | |||||||| || || |||||||| | Sbjct 66293 ATTTG---ACTTCTAACAAACGCGCCGTGAGGAGACTTAGAACAGCATGCGAACGTGCGA 66349 Query 475515 AGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAA 475574 || | | | || || ||||||| | | | || ||||||| || || ||||| Sbjct 66350 AGAGGACCTTATCATCCAGTACTCAAGCGAGCATCGAGATTGATTCCCTATTCGAAGGCG 66409 Query 475575 TTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTA 475634 | || | | | || ||||| | |||| |||||||| | | || | ||| Sbjct 66410 TCGACTTTTACACGTCGATTACCCGAGCTAGGTTTGAAGAATTGAACGCCGACTTGTTTC 66469 Query 475635 GAAAAACAATTGAACCCGTTGAACAAGTTCTCA-GAGATTCTAAACTTGACAAATCACAA 475693 || |||| | || |||||||| ||| || | | ||| | || || || ||| | ||| Sbjct 66470 GATCAACACTGGACCCCGTTGAG-AAGGCCTTACGCGATGCAAAGCTGGATAAAGCTCAA 66528 Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 || || || ||||||||||| ||||||||||| ||||||| ||||| | || ||||| Sbjct 66529 GTTCACGACATTGTTCTTGTTGGAGGTTCAACCCGAATTCCCAAAATCCAAAAACTGCTT 66588 Query 475754 TCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCA 475813 | | ||||||||| ||| | ||||| |||| | || || |||||||| ||||| Sbjct 66589 CAAGATTTTTTTAATGGCAAAGAATTAAACAAAAGCATCAACCCAGATGAAGCAGTTGCT 66648 Query 475814 TATGGAGCTGCTGTCCAAGCAGCTATTTT 475842 || || |||||||| ||||| || || || Sbjct 66649 TACGGCGCTGCTGTGCAAGCCGCGATATT 66677 >seq13151 Length=83164 Score = 156 bits (172), Expect = 3e-32 Identities = 396/595 (67%), Gaps = 8/595 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || || ||||||||||| || || ||| || || | || | ||| | || ||| Sbjct 72818 GCCATAGGCATTGATTTAGGCACAACCTACTCGTGCGTGGGCGTATTTCAACACGGAAAA 72877 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||| |||||||| || ||||||| || || || | || || Sbjct 72878 GTCGAGATCATCGCCAACGACCAAGGCAACCGAACAACCCCCAGCTACGTCGCCTTCACC 72937 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| || || || || || || || | ||| | || || | || Sbjct 72938 GACACCGAACGACTAATCGGCGAAGCAGCCAAGAACCAAATGTCGATGAACCCCGAAAAC 72997 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || |||| || || ||| || | || || | || | || || | || || Sbjct 72998 ACCCTTTTCGACGCGAAACGACTAATAGGAAGAAAATACGACGACTCGCAGATCAAAGAA 73057 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC-ATATATAGAAGC 474627 || || || ||||| || | |||||| | | | || || ||||| || | || ||| Sbjct 73058 GACTTGAAGCAATGGCCGTTCACGGTGATCAGTATCGGCGGCAAACCGATGTTTA-AAGT 73116 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | | || ||| ||| ||| ||| || |||||| |||| ||| |||||||||| Sbjct 73117 GAAATACAAAGGCGAAGACAAATTATTCTCCCCGGAAGAAATCAGTTCGATGGTTTTAGT 73176 Query 474688 CAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||||||||| |||| || |||| ||| | || | |||| | ||||| || || Sbjct 73177 CAAAATGAAGGAAACAGCCGAAGCT--TATTTAGGCCTTAAAGTGAAAGATGCGGTGATA 73234 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 |||||||| || ||||| || || || ||||| ||||| || ||||||||||| ||| Sbjct 73235 ACTGTTCCGGCGTATTTCAACGACTCGCAACGACAAGCGACCAAAGATGCGGGCGCCATT 73294 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 ||||| | ||||| | || || ||||| || || ||||| || || | || || || Sbjct 73295 GCAGGATTGAATGTAATTCGAATAATTAACGAGCCGACAGCTGCGGCGTTGGCCTACGGA 73354 Query 474866 CTTGATAAGAATTCTGACA-AAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | |||||||| ||||| | ||| || ||||| || || |||| || ||| Sbjct 73355 TTGGATAAGAA-TCTGAAAGGCGAAAAAACCGTTTTGATATTCGATTTAGGCGGT 73408 >seq12471 Length=105862 Score = 109 bits (120), Expect = 4e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||| |||||||| ||||| | ||| |||||||| |||||||| ||||| || Sbjct 73185 ATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTT 73244 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| ||| ||| || ||||| || | | | ||| || ||||| Sbjct 73245 GTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAAT 73304 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || ||||| || || || ||||| || Sbjct 73305 AGTTTTTCCAGTGAGGGTTTTGACAAAAATCTG 73337 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||| |||||||| ||||| | ||| |||||||| ||||| || || || || Sbjct 72668 ATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTT 72727 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| ||||||| ||| || || ||| | || | || | || || Sbjct 72728 ATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGAT 72787 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || | ||||||||||| ||||| Sbjct 72788 GGTCTTGCCAGTCAAGGTCTTAACGAAGATTTG 72820 >seq14046 Length=357214 Score = 105 bits (116), Expect = 4e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 290852 GGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCTAAAGTTGCC 290911 || ||||| || |||| | ||| |||| || || ||| || | | ||| ||||||| Sbjct 10015 GGCTCATTAATGATTCGCATAACAACAAGTCCAGCTATTGTTCCAGCATCCTTAGTTGCC 10074 Query 290912 TGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttccactttcttt 290971 |||||||| ||||| |||||||||||||| || || | |||||| | |||||||||| Sbjct 10075 TGGCGTTGAGCATCGTTAAAATAAGCAGGTACAGTCACAACAGCATGCGACACTTTCTTT 10134 Query 290972 ttcaaataattttctgccatttgttttatttcTATAAGTATTTGTGCGCAAATTTCTTCA 291031 ||||||| ||| || |||| || |||| || | | ||| ||||||| ||| Sbjct 10135 CCCAAATAAGCTTCGGCAATTTCCTTCATTTTAATCAAAACCATCGCGGAAATTTCCTCA 10194 Query 291032 GGT 291034 ||| Sbjct 10195 GGT 10197 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 ||||| || ||||||||||| ||||| || | | || || ||||| || |||||||| Sbjct 10527 GTAGAGATTATTGCCAATGATCAAGGCAACCGCATCACTCCTTCATACGTGGCTTTTACT 10468 Query 474449 ---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| |||| ||| ||||||||||| || ||| ||||| | |||||| | Sbjct 10467 CCGGAAGGAGAACGTCTAATTGGAGATGCCGCGAAAAATCAATTGACTAGTAATCCCGAA 10408 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGT 474541 || || |||| ||||||||| |||| || || ||| Sbjct 10407 AACACGGTTTTCGATGCTAAACGATTAATCGGGCGT 10372 >seq12593 Length=225266 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 ||||||||||| |||||||||||||| || |||||| |||| || ||| | || || || Sbjct 76287 GATTTTTCATCGCCAAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGCTCAACGATT 76228 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 || ||||| | ||||| || | ||| ||| ||| | | || || || ||| Sbjct 76227 ATCGGTGATAGTATTTGTCGAGTTCTTGAGTTTGTTGGTCATAATGTTACCAGGATTAAT 76168 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 || | ||||| ||||| || ||||| || ||| ||||||| Sbjct 76167 CACGTCGGTGACTGGGGCACGCAATTCGGCATGCTAATTGC 76127 >seq14070 Length=708083 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 627768 ACCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCC 627827 ||||||||| || |||| ||| ||||||||||| || ||||| | ||| ||||| || Sbjct 4066 ACCATCACGACCAGCTCGACCGATTTCTTGATAGTACGACTCGATGTCTTTCGGTGCTCC 4125 Query 627828 ATAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||| || | | || |||||| | ||||| ||| ||||| || ||||| | ||||| Sbjct 4126 GTAATGAATAATTTGTCGCACATCGGGTTTATCAATCCCCATACCGAATGCGACGGTTGC 4185 Query 627888 AACCAT 627893 || || Sbjct 4186 CACAAT 4191 >seq13938 Length=223151 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 627768 ACCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCC 627827 ||||||||| || |||| ||| ||||||||||| || ||||| | ||| ||||| || Sbjct 212629 ACCATCACGACCAGCTCGACCGATTTCTTGATAGTACGACTCGATGTCTTTCGGTGCTCC 212688 Query 627828 ATAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||| || | | || |||||| | ||||| ||| ||||| || ||||| | ||||| Sbjct 212689 GTAATGAATAATTTGTCGCACATCGGGTTTATCAATCCCCATACCGAATGCGACGGTTGC 212748 Query 627888 AACCAT 627893 || || Sbjct 212749 CACAAT 212754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267546972776372