Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 163 5e-35
seq12471 131 3e-25
seq7061 100 5e-16
seq13384 96.9 6e-15
>seq13894
Length=1211295
Score = 163 bits (180), Expect = 5e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| ||||| || || | ||||||||| | || | || || || || ||||||
Sbjct 232172 ATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 232231
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
||||| |||| ||| || ||||| || || ||||||||||||| || ||||| ||
Sbjct 232232 GATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGT 232291
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||||||||| || ||||| | || | ||| ||| |||||||||| |||
Sbjct 232292 GGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCG 232351
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| |||||||| || ||||| |||| ||||| ||||| || ||||||||
Sbjct 232352 ACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
Score = 118 bits (130), Expect = 2e-21
Identities = 169/238 (71%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 193123 TAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATAT 193182
||| ||| || |||||||||||||| | |||| ||||| || | || || || |
Sbjct 231479 TAAATTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGT 231538
Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242
| || ||||| || |||| ||| || ||||| ||||| ||||||||||| | ||||
Sbjct 231539 TGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTT 231598
Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302
| || || || || |||||||| || || ||||| | || | ||| ||| || || |
Sbjct 231599 GGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCG 231658
Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| | || ||||| || || || || || || |||| ||||| || || || |||||
Sbjct 231659 ATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||||||||| || ||||| ||||| | || | |||||| || || || |||
Sbjct 231944 ATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCG 232003
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | ||| || ||||| ||||| || || || |||| || ||||| ||
Sbjct 232004 GACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGT 232063
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || ||||| ||||| ||||| | || | ||| ||| || || || | ||
Sbjct 232064 GGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCG 232123
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | ||| || ||||| || |||| ||||| ||||| || |||||
Sbjct 232124 ACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
>seq12471
Length=105862
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| |||||||| | || |||| || | || | ||||| ||| || ||||||
Sbjct 72366 ATACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCG 72425
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
||| || | ||| || || ||||| ||||||||||| | | ||||||||| ||
Sbjct 72426 CTTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGT 72485
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| |||||||| |||||||| ||||| | ||||| ||| || || ||| | ||||
Sbjct 72486 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCA 72545
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || || || || ||||| ||||| || |||||
Sbjct 72546 ACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 129 bits (142), Expect = 1e-24
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || ||||||||||| || ||||| || | ||||||||| ||||| || ||||||||
Sbjct 73185 ATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTT 73244
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||||| || |||| ||||| ||| ||||| ||| | ||||||||| || || ||
Sbjct 73245 GTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAAT 73304
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||| || || || ||||| ||||| || |||||
Sbjct 73305 AGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||||||||| || || |||| ||||| || | || || || || || |||
Sbjct 72594 ATACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCG 72653
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || | | ||| || ||||||||||| || ||||| || | ||||||||| |||
Sbjct 72654 CTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGA 72713
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || ||||||||||| || |||| ||| | |||| || || || || |||
Sbjct 72714 GGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCA 72773
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| |||| ||| || || || || || | || || || || ||||||||
Sbjct 72774 ACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
>seq7061
Length=6671
Score = 100 bits (110), Expect = 5e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| ||||| ||||| || ||||| |||||||| || || || || | ||||||||||||
Sbjct 2918 ATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTT 2859
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|||||| || || ||| |||| | || ||||| ||| ||| |||| |||||
Sbjct 2858 ATCTTGAATCTTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAATCTATCGTTAT 2799
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359
| ||| || |||| ||||| ||||| || ||||
Sbjct 2798 GGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764
>seq13384
Length=139451
Score = 96.9 bits (106), Expect = 6e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216
||||| || || ||||| ||||||||||||||| || ||| | |||| || || |
Sbjct 37838 ATGCAGGGTTGCTTCTTTTTGAATATTATAGTCGGACAATGTTTGATAATCTTCCAAAAG 37897
Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276
|| || ||||||| ||| ||||| |||| || ||| ||||||||||||||||
Sbjct 37898 CTTACCAGCAAAAACCAATTGTTGTTGGTCAGTTGGCCATCCACCTTTATCTTGTATTTT 37957
Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336
|||||| ||| ||| || || ||||||||||| ||||| |||| || |
Sbjct 37958 ATGTTTTATGTTTTCAATTGTTTCTTGCATCTCAACTTCTAAGGTTATTATTTTCCCATT 38017
Query 193337 TAGCGTTTTTACAAATATTTG 193357
|| || |||| || |||||
Sbjct 38018 TAATGTCGTTACGAAAATTTG 38038
Score = 89.7 bits (98), Expect = 9e-13
Identities = 112/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
|||||| ||||| | || | ||||| || || |||| |||| ||||| |||
Sbjct 38043 CCACCTTTCAATACCAAAACTATATGCAGGGTTGCTTCTTCCTGAATACGATAGTGGGAC 38102
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
| ||||| |||| || || |||||||||||||||| |||| ||||| ||||| |||
Sbjct 38103 ATTGTTCTGTAATCCTCCAAATGTTTTCCGGCAAAAACCAATCGTTGTTGGTCAGGTGGT 38162
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATAT 193287
|| | ||| | || ||||||||| ||||| ||
Sbjct 38163 ATACATTCCTGATTTTGTATTTTATGTTTTAGAT 38196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899488649922480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |