Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13894 163 5e-35 seq12471 131 3e-25 seq7061 100 5e-16 seq13384 96.9 6e-15 >seq13894 Length=1211295 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| || || | ||||||||| | || | || || || || |||||| Sbjct 232172 ATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 232231 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| |||| ||| || ||||| || || ||||||||||||| || ||||| || Sbjct 232232 GATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGT 232291 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | || | ||| ||| |||||||||| ||| Sbjct 232292 GGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCG 232351 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| |||||||| || ||||| |||| ||||| ||||| || |||||||| Sbjct 232352 ACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193123 TAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATAT 193182 ||| ||| || |||||||||||||| | |||| ||||| || | || || || | Sbjct 231479 TAAATTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGT 231538 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 | || ||||| || |||| ||| || ||||| ||||| ||||||||||| | |||| Sbjct 231539 TGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTT 231598 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 | || || || || |||||||| || || ||||| | || | ||| ||| || || | Sbjct 231599 GGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCG 231658 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | | || ||||| || || || || || || |||| ||||| || || || ||||| Sbjct 231659 ATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || ||||| ||||| | || | |||||| || || || ||| Sbjct 231944 ATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCG 232003 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || ||||| ||||| || || || |||| || ||||| || Sbjct 232004 GACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGT 232063 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||| | || | ||| ||| || || || | || Sbjct 232064 GGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCG 232123 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || ||||| || |||| ||||| ||||| || ||||| Sbjct 232124 ACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 >seq12471 Length=105862 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||||||| | || |||| || | || | ||||| ||| || |||||| Sbjct 72366 ATACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCG 72425 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||| || | ||| || || ||||| ||||||||||| | | ||||||||| || Sbjct 72426 CTTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGT 72485 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||| | ||||| ||| || || ||| | |||| Sbjct 72486 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCA 72545 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || ||||| ||||| || ||||| Sbjct 72546 ACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||||||||| || ||||| || | ||||||||| ||||| || |||||||| Sbjct 73185 ATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTT 73244 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| ||||| ||| ||||| ||| | ||||||||| || || || Sbjct 73245 GTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAAT 73304 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || ||||| ||||| || ||||| Sbjct 73305 AGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || |||| ||||| || | || || || || || ||| Sbjct 72594 ATACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCG 72653 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || | | ||| || ||||||||||| || ||||| || | ||||||||| ||| Sbjct 72654 CTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGA 72713 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||||||||| || |||| ||| | |||| || || || || ||| Sbjct 72714 GGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCA 72773 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| ||| || || || || || | || || || || |||||||| Sbjct 72774 ACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 >seq7061 Length=6671 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||| ||||| || ||||| |||||||| || || || || | |||||||||||| Sbjct 2918 ATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTT 2859 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || ||| |||| | || ||||| ||| ||| |||| ||||| Sbjct 2858 ATCTTGAATCTTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAATCTATCGTTAT 2799 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 | ||| || |||| ||||| ||||| || |||| Sbjct 2798 GGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764 >seq13384 Length=139451 Score = 96.9 bits (106), Expect = 6e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216 ||||| || || ||||| ||||||||||||||| || ||| | |||| || || | Sbjct 37838 ATGCAGGGTTGCTTCTTTTTGAATATTATAGTCGGACAATGTTTGATAATCTTCCAAAAG 37897 Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276 || || ||||||| ||| ||||| |||| || ||| |||||||||||||||| Sbjct 37898 CTTACCAGCAAAAACCAATTGTTGTTGGTCAGTTGGCCATCCACCTTTATCTTGTATTTT 37957 Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 |||||| ||| ||| || || ||||||||||| ||||| |||| || | Sbjct 37958 ATGTTTTATGTTTTCAATTGTTTCTTGCATCTCAACTTCTAAGGTTATTATTTTCCCATT 38017 Query 193337 TAGCGTTTTTACAAATATTTG 193357 || || |||| || ||||| Sbjct 38018 TAATGTCGTTACGAAAATTTG 38038 Score = 89.7 bits (98), Expect = 9e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||| ||||| | || | ||||| || || |||| |||| ||||| ||| Sbjct 38043 CCACCTTTCAATACCAAAACTATATGCAGGGTTGCTTCTTCCTGAATACGATAGTGGGAC 38102 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| |||| || || |||||||||||||||| |||| ||||| ||||| ||| Sbjct 38103 ATTGTTCTGTAATCCTCCAAATGTTTTCCGGCAAAAACCAATCGTTGTTGGTCAGGTGGT 38162 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATAT 193287 || | ||| | || ||||||||| ||||| || Sbjct 38163 ATACATTCCTGATTTTGTATTTTATGTTTTAGAT 38196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899488649922480