Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 134 2e-26
seq7061 105 1e-17
seq477 104 3e-17
seq12471 98.7 1e-15
seq13458 96.9 5e-15
seq13338 96.9 5e-15
seq13244 93.3 6e-14
seq13384 87.8 3e-12
>seq13894
Length=1211295
Score = 134 bits (148), Expect = 2e-26
Identities = 170/232 (73%), Gaps = 5/232 (2%)
Strand=Plus/Minus
Query 155822 aaTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | ||||| || ||||| || || || || | ||||||||| |||
Sbjct 231946 AATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTC 231887
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| || ||||||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct 231886 CGATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCA 231827
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| | ||||| | ||||||||| || || |||||| | |||| || |||||||| |
Sbjct 231826 GCAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACA- 231768
Query 156002 TATATCCAAAGAGG---CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| ||||| | ||| |||| |||||| | ||| | | || |||||||||
Sbjct 231767 -ACATCCAGAAAGGAATCGACCCTTCATCTTGTGCTGCGTTTGAGAGGCGGT 231717
Score = 129 bits (142), Expect = 9e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 155820 aaaaTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|||||||| || ||| | ||||| || || || || || || || | |||||||| |
Sbjct 232404 AAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCT 232345
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| |||| ||| ||||||||| ||||| || ||||||||||| || || || ||
Sbjct 232344 TCCGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGAT 232285
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|| ||| |||| |||| ||| || ||||| | |||||| | |||| ||||| || ||
Sbjct 232284 CAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTAC 232225
Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || || || |||| |||||| | || || | ||||||||||||
Sbjct 232224 AACATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGGT 232174
Score = 116 bits (128), Expect = 5e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| || ||||||||||| || || || ||||||||| ||
Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||| || ||||| ||||| ||||| ||||| || ||||| ||
Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAG 232054
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| ||||||| | || || ||||| | |||||| | | || || || ||||| ||
Sbjct 232053 CAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAAC 231994
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| |||||| | || |||||| | || | | || ||||| ||
Sbjct 231993 ATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGG 231947
Score = 105 bits (116), Expect = 1e-17
Identities = 169/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| || || ||||| || ||||| | ||||||||| ||
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || ||||| || || ||||||||||| || || || |||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | || |||| ||| || ||||| | |||||| | |||| || || ||||| ||
Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATTGAAT 156062
|| || || |||| || ||||| || || |||| ||||| || | |||| ||
Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAATGTAATTTAAA 231477
Query 156063 AAT 156065
|||
Sbjct 231476 AAT 231474
>seq7061
Length=6671
Score = 105 bits (116), Expect = 1e-17
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 155824 TGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTG 155883
|||| || ||| ||||||| || || || ||| | || || |||| ||| |||| |
Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGAGCATTCGG 2823
Query 155884 ATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAAC 155943
||| || | | | ||| | || || |||||||||||||| ||| | || || || |
Sbjct 2824 ATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGC 2883
Query 155944 AAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATA 156003
||||||| || | ||| ||||| ||| | |||||| | | | | |||||| ||||
Sbjct 2884 AAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAATA 2943
Query 156004 TATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAA 156056
|| ||||| || | |||||||| ||||||||| | || ||| |||||
Sbjct 2944 TACAGAAAGAAAACACTTTACATTTAGTATTAAGATTACGCGGTGGTTTAAAA 2996
>seq477
Length=28440
Score = 104 bits (114), Expect = 3e-17
Identities = 106/137 (77%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235
|||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | |
Sbjct 7180 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 7238
Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295
|| ||||||||||||||||| ||||| | |||||||| || || || ||| ||||
Sbjct 7239 TTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCG 7298
Query 18296 AACGCTATTAATCTTTC 18312
|| || || | || |||
Sbjct 7299 AAAGCGATGATTCGTTC 7315
>seq12471
Length=105862
Score = 98.7 bits (108), Expect = 1e-15
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 155822 aaTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | |||||| | ||||||||||| ||||| || ||||||||
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| || |||||| || || ||||| |||||||| || |||||||| ||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
||| | ||||| | |||||||| || | ||||||
Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGAT 73475
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| ||||||| | ||||||||||||||||| || || || ||
Sbjct 73858 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCAAGC 73799
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || |||||||| || || || ||||| ||||| || ||||| || |||
Sbjct 73798 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAA 73739
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
|| ||||||||| || || ||||||||||||||
Sbjct 73738 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGA 73704
Score = 87.8 bits (96), Expect = 3e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| | ||||||||||||||||| | ||||| ||
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || ||| || || ||||| |||||||| || ||||| || |||
Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||||| || || || || | |||||| | || | ||||| ||
Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| ||||| |||||||||| || ||| | || || |||||||||
Sbjct 73160 ATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGGT 73113
Score = 86.0 bits (94), Expect = 9e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| ||||||| || || || || || |||||||| | |
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||| || ||| || || ||||| |||||||| || || ||||| |||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT-TTATCAGATTATAA 156001
|| | | || | ||| || || || ||||||||| | || ||| | ||||| ||
Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGC-GATTACAA 72934
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035
|| ||||| | ||||||||||| || |||
Sbjct 72933 CATTCAGAAAGAATCAACGCTTCATTTGGTTTTA 72900
>seq13458
Length=7495
Score = 96.9 bits (106), Expect = 5e-15
Identities = 99/128 (77%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235
|||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | |
Sbjct 2913 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 2855
Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295
|| ||||||||||||||||| ||||| | |||||||| || || || ||| ||||
Sbjct 2854 TTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCG 2795
Query 18296 AACGCTAT 18303
| || ||
Sbjct 2794 TAAGCGAT 2787
Score = 93.3 bits (102), Expect = 6e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 18195 TTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCG 18254
||||||||||||| ||||| || |||||||| | ||| | ||| ||||||||||||||||
Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447
Query 18255 ATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTAT 18303
| ||||| | |||||||| || || || ||| |||||| || ||
Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGAT 6398
>seq13338
Length=646138
Score = 96.9 bits (106), Expect = 5e-15
Identities = 99/128 (77%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235
|||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | |
Sbjct 454018 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 454076
Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295
|| |||||||||||||| || ||||| || |||||||| || || || ||| |||
Sbjct 454077 TTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCA 454136
Query 18296 AACGCTAT 18303
|| || ||
Sbjct 454137 AAAGCGAT 454144
Score = 86.0 bits (94), Expect = 9e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928
|||||| || |||||||||||||||||||| ||||| || ||||| ||||| | |||
Sbjct 453583 GTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTCCAAAGATATATTCTCCAT 453642
Query 17929 AAAATCAAATGGATT 17943
|||||||||||||||
Sbjct 453643 AAAATCAAATGGATT 453657
>seq13244
Length=114396
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/133 (76%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235
|||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | |
Sbjct 3492 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 3550
Query 18236 ttttttAGCCAAAATAT-----CGATGCGAAACTACTAGAAAAGAATATACCCTCAACGC 18290
|| |||||||||||||| ||| ||||| || |||||||| || || || |||
Sbjct 3551 TTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGG 3610
Query 18291 ACGCGAACGCTAT 18303
|||||| || ||
Sbjct 3611 CCGCGAAAGCGAT 3623
>seq13384
Length=139451
Score = 87.8 bits (96), Expect = 3e-12
Identities = 137/191 (72%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 155841 ACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT-GATAATATTTTAAACGT 155899
||||| | ||| |||| || || |||||||| || ||| | || | ||| |||| |
Sbjct 38023 ACATTAAATGGGAAAATAATAACCTTAGAAGTTGA-GATGCAAGAAACAATTGAAAACAT 37965
Query 155900 GAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGC 155959
||| |||||||||||||||||| || || | || |||||| |||| ||| |||
Sbjct 37964 AAAACATAAAATACAAGATAAAGGTGGATGGCCAACTGACCAACAACAATTGGTTTTTGC 37905
Query 155960 CGGTAAGCAGCTCGAAGA-TACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGA 156018
||||||| | ||||| || || ||| || || || |||||||| ||||| || |
Sbjct 37904 TGGTAAGCTTTTGGAAGATTATCA-AACATTGTCCGACTATAATATTCAAAAAGAAGCAA 37846
Query 156019 CGCTTCATTTA 156029
| || ||||||
Sbjct 37845 CCCTGCATTTA 37835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731737161732400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |