Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq13894 134 2e-26 seq7061 105 1e-17 seq477 104 3e-17 seq12471 98.7 1e-15 seq13458 96.9 5e-15 seq13338 96.9 5e-15 seq13244 93.3 6e-14 seq13384 87.8 3e-12 >seq13894 Length=1211295 Score = 134 bits (148), Expect = 2e-26 Identities = 170/232 (73%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 155822 aaTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| || ||||| || || || || | ||||||||| ||| Sbjct 231946 AATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTC 231887 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||||||||| ||||| ||||| ||||||||||| ||||| || || Sbjct 231886 CGATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCA 231827 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||||||||| || || |||||| | |||| || |||||||| | Sbjct 231826 GCAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACA- 231768 Query 156002 TATATCCAAAGAGG---CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||| | ||| |||| |||||| | ||| | | || ||||||||| Sbjct 231767 -ACATCCAGAAAGGAATCGACCCTTCATCTTGTGCTGCGTTTGAGAGGCGGT 231717 Score = 129 bits (142), Expect = 9e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155820 aaaaTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | ||||| || || || || || || || | |||||||| | Sbjct 232404 AAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCT 232345 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||||||||| ||||| || ||||||||||| || || || || Sbjct 232344 TCCGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGAT 232285 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| |||| |||| ||| || ||||| | |||||| | |||| ||||| || || Sbjct 232284 CAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTAC 232225 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || || |||| |||||| | || || | |||||||||||| Sbjct 232224 AACATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGGT 232174 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| || ||||||||||| || || || ||||||||| || Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| ||||| ||||| ||||| || ||||| || Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAG 232054 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | || || ||||| | |||||| | | || || || ||||| || Sbjct 232053 CAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAAC 231994 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || |||||| | || | | || ||||| || Sbjct 231993 ATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGG 231947 Score = 105 bits (116), Expect = 1e-17 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| || || ||||| || ||||| | ||||||||| || Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| || || ||||||||||| || || || ||| Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||| || ||||| | |||||| | |||| || || ||||| || Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATTGAAT 156062 || || || |||| || ||||| || || |||| ||||| || | |||| || Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAATGTAATTTAAA 231477 Query 156063 AAT 156065 ||| Sbjct 231476 AAT 231474 >seq7061 Length=6671 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 155824 TGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTG 155883 |||| || ||| ||||||| || || || ||| | || || |||| ||| |||| | Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGAGCATTCGG 2823 Query 155884 ATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAAC 155943 ||| || | | | ||| | || || |||||||||||||| ||| | || || || | Sbjct 2824 ATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGC 2883 Query 155944 AAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATA 156003 ||||||| || | ||| ||||| ||| | |||||| | | | | |||||| |||| Sbjct 2884 AAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAATA 2943 Query 156004 TATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAA 156056 || ||||| || | |||||||| ||||||||| | || ||| ||||| Sbjct 2944 TACAGAAAGAAAACACTTTACATTTAGTATTAAGATTACGCGGTGGTTTAAAA 2996 >seq477 Length=28440 Score = 104 bits (114), Expect = 3e-17 Identities = 106/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 |||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | | Sbjct 7180 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 7238 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295 || ||||||||||||||||| ||||| | |||||||| || || || ||| |||| Sbjct 7239 TTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCG 7298 Query 18296 AACGCTATTAATCTTTC 18312 || || || | || ||| Sbjct 7299 AAAGCGATGATTCGTTC 7315 >seq12471 Length=105862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 aaTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | |||||| | ||||||||||| ||||| || |||||||| Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || |||||| || || ||||| |||||||| || |||||||| || Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||| | |||||||| || | |||||| Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGAT 73475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| | ||||||||||||||||| || || || || Sbjct 73858 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCAAGC 73799 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || ||||| ||||| || ||||| || ||| Sbjct 73798 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAA 73739 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||||||||| || || |||||||||||||| Sbjct 73738 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGA 73704 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||||||||||||||| | ||||| || Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || ||||| |||||||| || ||||| || ||| Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || || || || | |||||| | || | ||||| || Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||||||||| || ||| | || || ||||||||| Sbjct 73160 ATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGGT 73113 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155823 aTGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||||| || || || || || |||||||| | | Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT-TTATCAGATTATAA 156001 || | | || | ||| || || || ||||||||| | || ||| | ||||| || Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGC-GATTACAA 72934 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | ||||||||||| || ||| Sbjct 72933 CATTCAGAAAGAATCAACGCTTCATTTGGTTTTA 72900 >seq13458 Length=7495 Score = 96.9 bits (106), Expect = 5e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 |||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | | Sbjct 2913 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 2855 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295 || ||||||||||||||||| ||||| | |||||||| || || || ||| |||| Sbjct 2854 TTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCG 2795 Query 18296 AACGCTAT 18303 | || || Sbjct 2794 TAAGCGAT 2787 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 18195 TTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCG 18254 ||||||||||||| ||||| || |||||||| | ||| | ||| |||||||||||||||| Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447 Query 18255 ATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTAT 18303 | ||||| | |||||||| || || || ||| |||||| || || Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGAT 6398 >seq13338 Length=646138 Score = 96.9 bits (106), Expect = 5e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 |||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | | Sbjct 454018 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 454076 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295 || |||||||||||||| || ||||| || |||||||| || || || ||| ||| Sbjct 454077 TTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCA 454136 Query 18296 AACGCTAT 18303 || || || Sbjct 454137 AAAGCGAT 454144 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 |||||| || |||||||||||||||||||| ||||| || ||||| ||||| | ||| Sbjct 453583 GTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTCCAAAGATATATTCTCCAT 453642 Query 17929 AAAATCAAATGGATT 17943 ||||||||||||||| Sbjct 453643 AAAATCAAATGGATT 453657 >seq13244 Length=114396 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/133 (76%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 |||||| | |||||| |||||||||||||| ||||| || |||||||| | ||| | | Sbjct 3492 AAACCT-CGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGT 3550 Query 18236 ttttttAGCCAAAATAT-----CGATGCGAAACTACTAGAAAAGAATATACCCTCAACGC 18290 || |||||||||||||| ||| ||||| || |||||||| || || || ||| Sbjct 3551 TTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGG 3610 Query 18291 ACGCGAACGCTAT 18303 |||||| || || Sbjct 3611 CCGCGAAAGCGAT 3623 >seq13384 Length=139451 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 155841 ACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT-GATAATATTTTAAACGT 155899 ||||| | ||| |||| || || |||||||| || ||| | || | ||| |||| | Sbjct 38023 ACATTAAATGGGAAAATAATAACCTTAGAAGTTGA-GATGCAAGAAACAATTGAAAACAT 37965 Query 155900 GAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGC 155959 ||| |||||||||||||||||| || || | || |||||| |||| ||| ||| Sbjct 37964 AAAACATAAAATACAAGATAAAGGTGGATGGCCAACTGACCAACAACAATTGGTTTTTGC 37905 Query 155960 CGGTAAGCAGCTCGAAGA-TACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGA 156018 ||||||| | ||||| || || ||| || || || |||||||| ||||| || | Sbjct 37904 TGGTAAGCTTTTGGAAGATTATCA-AACATTGTCCGACTATAATATTCAAAAAGAAGCAA 37846 Query 156019 CGCTTCATTTA 156029 | || |||||| Sbjct 37845 CCCTGCATTTA 37835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731737161732400