Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 145 2e-29
seq7061 131 3e-25
seq12471 118 2e-21
seq13384 96.9 7e-15
seq12177 87.8 4e-12
>seq13894
Length=1211295
Score = 145 bits (160), Expect = 2e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| ||||| | ||| ||||| | ||| | || | || || ||| || || ||
Sbjct 232172 ATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 232231
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| ||||| |||| |||||||| || || ||||| ||||||| || ||||| |||
Sbjct 232232 GATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGT 232291
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||||||||| || ||||| || || || || | ||| || | ||
Sbjct 232292 GGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCG 232351
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
||||| ||||| ||||| ||||| ||||| ||||| | ||| |||||||||||
Sbjct 232352 ACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
>seq7061
Length=6671
Score = 131 bits (144), Expect = 3e-25
Identities = 181/251 (72%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 192286 AGTATACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCC 192345
|||| | || || ||| | | |||||| | | | ||||||||||||||||||
Sbjct 3013 AGTAAAAATTATAATTTTTTTAAACCACCGCGTAATCTTAATACTAAATGTAAAGTGTTT 2954
Query 192346 TCTTTAGAGATATTATAATCAGATA-ATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404
||||| ||||| ||||| | | ||| |||||| || || ||||||||||||||
Sbjct 2953 TCTTTCTGTATATTGTAATCTTCGAGACGTTT-TTCATCTTCTAACTGTTTACCAGCAAA 2895
Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464
||||||||| || || || |||| |||||||||||||||||| || || | ||| | ||
Sbjct 2894 GATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTTGATATA 2835
Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524
| || | ||| || || |||| || |||| ||| || ||||| |||||||
Sbjct 2834 TTTGATGGTATCCGAATGCTCGCAATCTATCGTTATGGATTTCCCCGTTAAAGTTTTAAC 2775
Query 192525 AAATATCTGCA 192535
||| |||||||
Sbjct 2774 AAAGATCTGCA 2764
>seq12471
Length=105862
Score = 118 bits (130), Expect = 2e-21
Identities = 127/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| || || |||| ||||| |||||||| ||||| || | | ||||||||| |||||
Sbjct 72428 TAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| |||||||| |||||| ||||||||| || | || | || ||
Sbjct 72488 GATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| ||||||||||| || ||||| | ||||| | ||| ||||||||
Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 111 bits (122), Expect = 3e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405
||||| ||| || ||||| | ||| ||| |||| ||||||||||| ||||| ||
Sbjct 73150 TCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAA 73209
Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465
|| || | ||||||||| || || || |||||||| ||||| || || |||||||||
Sbjct 73210 ATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTC 73269
Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525
|||| || | || ||||| || ||||| ||||| ||||| | ||||| | |
Sbjct 73270 TCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACA 73329
Query 192526 AATATCTGCAT 192536
|| ||||||||
Sbjct 73330 AAAATCTGCAT 73340
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | || | || ||||| | ||| | || || ||| || |||||
Sbjct 72594 ATACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCG 72653
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| || |||| ||||||||||| ||||| || || || | ||||||||| ||
Sbjct 72654 CTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGA 72713
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||||||||| || || ||| ||||| || | || | |||
Sbjct 72714 GGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCA 72773
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| |||| ||| ||||| || ||||| || || |||| || || |||||
Sbjct 72774 ACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
Score = 105 bits (116), Expect = 1e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||||||||||||| || ||||| || | ||||||||| || || || |||||||
Sbjct 73474 CATCTTCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTT 73533
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
| ||||| || || ||| ||||| || | ||| | || ||||| | ||||
Sbjct 73534 TGTCTTGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAA 73593
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||||| ||||| | |||||| | || |||||||||
Sbjct 73594 TGGTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | ||| | || || || || | || | ||| || ||| || |||||
Sbjct 72141 CCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTC 72200
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
||||| || |||| || | |||||||||||||||||| |||| |||||| || || ||
Sbjct 72201 AATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGA 72260
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
||||| ||||| ||||| || ||| || ||||| || | || | || |||
Sbjct 72261 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACT 72320
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | || ||||| || ||||| | ||||| | ||| ||||||||
Sbjct 72321 TCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 95.1 bits (104), Expect = 2e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 192322 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAA-TGTTCGTTC 192380
||||| || ||||| | || | ||||| || || ||||| | ||| ||| || |
Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATC-GCTAAGTGTGCGACC 72956
Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440
||| || | |||||| ||||||||||||| | ||||||||| ||||| || ||||||||
Sbjct 72957 ATCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTT 73016
Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500
||||| || || ||| ||||| |||| || | || ||||| | || ||
Sbjct 73017 GTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGAT 73076
Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| || ||||| | ||||| | || || |||||
Sbjct 73077 GGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
>seq13384
Length=139451
Score = 96.9 bits (106), Expect = 7e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||| ||||| | | ||| |||||||| | || | || | ||| |||| ||||| ||
Sbjct 40846 ACCGCCTCTCAATCTTAAAACTAAATGAATCGTTGACTTGTCAGAAATATGATAATGAGC 40905
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|||||| || || || || || || ||| |||| | || || ||||||||||||||
Sbjct 40906 CAATGTTAAATCGTCCTCTAACTGCTTTCCACCAAAAACTAGTCGTTGTTGATCAGGTGG 40965
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTAC 192461
|||||||||||| ||||| | |||| ||| ||
Sbjct 40966 TATTCCTTCTTTTTCTTGAACTTTAAATTTCAC 40998
Score = 93.3 bits (102), Expect = 8e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 192330 TAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAA 192389
|||||| | || || ||||| |||||||| || || |||||| | | ||| |||||
Sbjct 37835 TAAATGCAGGGTTGCTTCTTTTTGAATATTATAGTCGGACAATGTTTGATAATCTTCCAA 37894
Query 192390 TTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449
| ||||||||||| | ||| ||||| |||| ||| ||| |||||||||||||
Sbjct 37895 AAGCTTACCAGCAAAAACCAATTGTTGTTGGTCAGTTGGCCATCCACCTTTATCTTGTAT 37954
Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509
||||| ||||| || || | ||| | || ||||||| || || |||| ||
Sbjct 37955 TTTATGTTTTATGTTTTCAATTGTTTCTTGCATCTCAACTTCTAAGGTTATTATTTTCCC 38014
Query 192510 AGTTAATGT 192518
| |||||||
Sbjct 38015 ATTTAATGT 38023
Score = 84.2 bits (92), Expect = 4e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357
|| |||| | ||||||||| | | || |||||||| | || | ||| ||||| |||
Sbjct 34928 AGATTAAAACCACCACCTCTCAATCTTATAACTAAATGAAGCGTTGACTCGTTAGAAATA 34987
Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417
| |||| | ||||| ||| || || || || | ||| ||| |||| || |||
Sbjct 34988 TGATAACAGGCCAATGTATTTTCGTCTTCTAACTGCCTTCCATTAAAAATTAGTCGTTGT 35047
Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 192456
|| |||||||| ||||||||||| || || |||||| ||
Sbjct 35048 TGGTCAGGTGGGATTCCTTCTTTTTCGTGAATTTTAATT 35086
>seq12177
Length=61224
Score = 87.8 bits (96), Expect = 4e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492
|||||||| ||||| |||||| ||| ||||| |||| ||| |||| ||| |||||
Sbjct 22486 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCCGACGGTTCAACTTCC 22427
Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540
| ||||||||||||||| || | ||| || | || ||||||||| ||
Sbjct 22426 AAAGTAATGGTTTTACCCGTAAGTGTCTTGACGAAGATCTGCATTATA 22379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984294087412650
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