Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq13894 145 2e-29 seq7061 131 3e-25 seq12471 118 2e-21 seq13384 96.9 7e-15 seq12177 87.8 4e-12 >seq13894 Length=1211295 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | ||| ||||| | ||| | || | || || ||| || || || Sbjct 232172 ATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 232231 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| ||||| |||| |||||||| || || ||||| ||||||| || ||||| ||| Sbjct 232232 GATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGT 232291 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || ||||| || || || || | ||| || | || Sbjct 232292 GGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCG 232351 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| ||||| ||||| ||||| ||||| | ||| ||||||||||| Sbjct 232352 ACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 >seq7061 Length=6671 Score = 131 bits (144), Expect = 3e-25 Identities = 181/251 (72%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 192286 AGTATACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCC 192345 |||| | || || ||| | | |||||| | | | |||||||||||||||||| Sbjct 3013 AGTAAAAATTATAATTTTTTTAAACCACCGCGTAATCTTAATACTAAATGTAAAGTGTTT 2954 Query 192346 TCTTTAGAGATATTATAATCAGATA-ATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 ||||| ||||| ||||| | | ||| |||||| || || |||||||||||||| Sbjct 2953 TCTTTCTGTATATTGTAATCTTCGAGACGTTT-TTCATCTTCTAACTGTTTACCAGCAAA 2895 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||||||||| || || || |||| |||||||||||||||||| || || | ||| | || Sbjct 2894 GATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTTGATATA 2835 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 | || | ||| || || |||| || |||| ||| || ||||| ||||||| Sbjct 2834 TTTGATGGTATCCGAATGCTCGCAATCTATCGTTATGGATTTCCCCGTTAAAGTTTTAAC 2775 Query 192525 AAATATCTGCA 192535 ||| ||||||| Sbjct 2774 AAAGATCTGCA 2764 >seq12471 Length=105862 Score = 118 bits (130), Expect = 2e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| ||||| |||||||| ||||| || | | ||||||||| ||||| Sbjct 72428 TAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||||||| |||||| ||||||||| || | || | || || Sbjct 72488 GATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||||||||| || ||||| | ||||| | ||| |||||||| Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || ||||| | ||| ||| |||| ||||||||||| ||||| || Sbjct 73150 TCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAA 73209 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || || | ||||||||| || || || |||||||| ||||| || || ||||||||| Sbjct 73210 ATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTC 73269 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 |||| || | || ||||| || ||||| ||||| ||||| | ||||| | | Sbjct 73270 TCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACA 73329 Query 192526 AATATCTGCAT 192536 || |||||||| Sbjct 73330 AAAATCTGCAT 73340 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || ||||| | ||| | || || ||| || ||||| Sbjct 72594 ATACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCG 72653 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || |||| ||||||||||| ||||| || || || | ||||||||| || Sbjct 72654 CTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGA 72713 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || || ||| ||||| || | || | ||| Sbjct 72714 GGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCA 72773 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| ||||| || ||||| || || |||| || || ||||| Sbjct 72774 ACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||||||||||||| || ||||| || | ||||||||| || || || ||||||| Sbjct 73474 CATCTTCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTT 73533 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || || ||| ||||| || | ||| | || ||||| | |||| Sbjct 73534 TGTCTTGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAA 73593 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| ||||| | |||||| | || ||||||||| Sbjct 73594 TGGTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||| | || || || || | || | ||| || ||| || ||||| Sbjct 72141 CCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTC 72200 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| || | |||||||||||||||||| |||| |||||| || || || Sbjct 72201 AATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGA 72260 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| ||||| ||||| || ||| || ||||| || | || | || ||| Sbjct 72261 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACT 72320 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 72321 TCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 192322 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAA-TGTTCGTTC 192380 ||||| || ||||| | || | ||||| || || ||||| | ||| ||| || | Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATC-GCTAAGTGTGCGACC 72956 Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 ||| || | |||||| ||||||||||||| | ||||||||| ||||| || |||||||| Sbjct 72957 ATCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTT 73016 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 ||||| || || ||| ||||| |||| || | || ||||| | || || Sbjct 73017 GTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGAT 73076 Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||| | ||||| | || || ||||| Sbjct 73077 GGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 >seq13384 Length=139451 Score = 96.9 bits (106), Expect = 7e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| |||||||| | || | || | ||| |||| ||||| || Sbjct 40846 ACCGCCTCTCAATCTTAAAACTAAATGAATCGTTGACTTGTCAGAAATATGATAATGAGC 40905 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||| || || || || || || ||| |||| | || || |||||||||||||| Sbjct 40906 CAATGTTAAATCGTCCTCTAACTGCTTTCCACCAAAAACTAGTCGTTGTTGATCAGGTGG 40965 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTAC 192461 |||||||||||| ||||| | |||| ||| || Sbjct 40966 TATTCCTTCTTTTTCTTGAACTTTAAATTTCAC 40998 Score = 93.3 bits (102), Expect = 8e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 192330 TAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAA 192389 |||||| | || || ||||| |||||||| || || |||||| | | ||| ||||| Sbjct 37835 TAAATGCAGGGTTGCTTCTTTTTGAATATTATAGTCGGACAATGTTTGATAATCTTCCAA 37894 Query 192390 TTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 | ||||||||||| | ||| ||||| |||| ||| ||| ||||||||||||| Sbjct 37895 AAGCTTACCAGCAAAAACCAATTGTTGTTGGTCAGTTGGCCATCCACCTTTATCTTGTAT 37954 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 ||||| ||||| || || | ||| | || ||||||| || || |||| || Sbjct 37955 TTTATGTTTTATGTTTTCAATTGTTTCTTGCATCTCAACTTCTAAGGTTATTATTTTCCC 38014 Query 192510 AGTTAATGT 192518 | ||||||| Sbjct 38015 ATTTAATGT 38023 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357 || |||| | ||||||||| | | || |||||||| | || | ||| ||||| ||| Sbjct 34928 AGATTAAAACCACCACCTCTCAATCTTATAACTAAATGAAGCGTTGACTCGTTAGAAATA 34987 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 | |||| | ||||| ||| || || || || | ||| ||| |||| || ||| Sbjct 34988 TGATAACAGGCCAATGTATTTTCGTCTTCTAACTGCCTTCCATTAAAAATTAGTCGTTGT 35047 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 192456 || |||||||| ||||||||||| || || |||||| || Sbjct 35048 TGGTCAGGTGGGATTCCTTCTTTTTCGTGAATTTTAATT 35086 >seq12177 Length=61224 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||| ||||| |||||| ||| ||||| |||| ||| |||| ||| ||||| Sbjct 22486 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCCGACGGTTCAACTTCC 22427 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 | ||||||||||||||| || | ||| || | || ||||||||| || Sbjct 22426 AAAGTAATGGTTTTACCCGTAAGTGTCTTGACGAAGATCTGCATTATA 22379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984294087412650