Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13894 136 7e-27 seq7061 136 7e-27 seq12471 114 2e-20 seq13384 98.7 2e-15 seq12177 96.9 6e-15 >seq13894 Length=1211295 Score = 136 bits (150), Expect = 7e-27 Identities = 192/268 (72%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 171802 TAAATTAATAGATATAGAGTATACTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATA 171861 ||||| |||| | | | | ||| |||| | || ||| |||||||| | ||| || | Sbjct 231454 TAAATGAATACAGAAAAAATAT--TTTTAAATTACATT---CCACCTCTCAATCGCAAAA 231508 Query 171862 CTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCA 171921 | ||||| | ||| | || || || || ||||| || || | ||| | || |||| Sbjct 231509 CCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCA 231568 Query 171922 ATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTA 171981 |||| || || ||||||||||| | |||||||| ||||| || |||||||| || || | Sbjct 231569 ATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGA 231628 Query 171982 TTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 |||| || ||||| || || || || | ||| ||||| || |||||||| || | Sbjct 231629 TTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTC 231688 Query 172042 CAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| ||||| | ||| |||||||| Sbjct 231689 CGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||||| | ||| | || | || || || || || || Sbjct 232172 ATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 232231 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| | || |||||||| || || ||||||||||||| || || || ||| Sbjct 232232 GATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGT 232291 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || ||||| || || || || ||||| || | || Sbjct 232292 GGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCG 232351 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| ||||| ||||| ||||| ||||| | || ||||||||||| Sbjct 232352 ACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 >seq7061 Length=6671 Score = 136 bits (150), Expect = 7e-27 Identities = 180/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 171819 AGTATACTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCC 171878 |||| | || || ||| | | |||||| | | || |||||||||||||||||| Sbjct 3013 AGTAAAAATTATAATTTTTTTAAACCACCGCGTAATCTTAATACTAAATGTAAAGTGTTT 2954 Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||||| |||||| | | | ||| || || || |||||||||||||| Sbjct 2953 TCTTTCTGTATATTGTAATCTTCGAGACGTTTTTCATCTTCTAACTGTTTACCAGCAAAG 2894 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 |||||||| || ||||| |||| |||||||||||||||||| || || | ||| | || Sbjct 2893 ATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATCTTTTCTTTGATATAT 2834 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 | || ||||| || || |||| || |||| ||| || ||||| ||||||| Sbjct 2833 TTGATGGTATCCGAATGCTCGCAATCTATCGTTATGGATTTCCCCGTTAAAGTTTTAACA 2774 Query 172059 AATATCTGCA 172068 || ||||||| Sbjct 2773 AAGATCTGCA 2764 >seq12471 Length=105862 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || || || ||||| || | || ||||| |||||||| |||||| Sbjct 72405 TCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAA 72464 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | | |||||| || ||||| |||||||| |||||||| |||||| ||||||||| Sbjct 72465 ATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTC 72524 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || || || | || ||||| ||||||||||| || ||||| | ||||| | Sbjct 72525 TCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACA 72584 Query 172059 AATATCTGCAT 172069 || |||||||| Sbjct 72585 AAGATCTGCAT 72595 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| | || ||||||||||| ||||| ||||| || | |||||| || || || || ||| Sbjct 73180 CGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCT 73239 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 ||||| ||||| || || ||||||||| ||||| || | || ||||| || Sbjct 73240 TCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGC 73299 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| | ||||| | || |||||||| Sbjct 73300 GTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||||||||| || || || || | |||||| || || || || |||||||| Sbjct 73476 TCTTCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTG 73535 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || ||| ||||| || ||||| | || ||||| | |||||| Sbjct 73536 TCTTGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATG 73595 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| | |||||| | ||| ||||||||| Sbjct 73596 GTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || ||||| | ||| | || || || || ||||| Sbjct 72594 ATACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCG 72653 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || | || ||||||||||| ||||| ||||| || | |||||| || || Sbjct 72654 CTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGA 72713 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || || ||| ||||| || || || | ||| Sbjct 72714 GGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCA 72773 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| ||||| || ||||| || || |||| ||| || ||||| Sbjct 72774 ACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||||||||||||||| || |||| ||||||||| || || ||||| ||||| Sbjct 72213 TCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTG 72272 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| || ||||| || || || | || ||||| | || ||| Sbjct 72273 TCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATG 72332 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | ||||| | || |||||||| Sbjct 72333 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 >seq13384 Length=139451 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 171863 TAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAA 171922 |||||| | || || ||||| ||||||||| || || || | | | | || ||||| Sbjct 37835 TAAATGCAGGGTTGCTTCTTTTTGAATATTATAGTCGGACAATGTTTGATAATCTTCCAA 37894 Query 171923 TTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTAT 171982 | ||||||||||||| ||| |||||||||| ||| ||| ||||||||||||| Sbjct 37895 AAGCTTACCAGCAAAAACCAATTGTTGTTGGTCAGTTGGCCATCCACCTTTATCTTGTAT 37954 Query 171983 TTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 172042 ||||| ||||| || || || ||| | || ||||||| || || |||| || Sbjct 37955 TTTATGTTTTATGTTTTCAATTGTTTCTTGCATCTCAACTTCTAAGGTTATTATTTTCCC 38014 Query 172043 AGTTAATGT 172051 | ||||||| Sbjct 38015 ATTTAATGT 38023 Score = 96.9 bits (106), Expect = 6e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || |||||||| | || | ||| |||||||||| |||| | Sbjct 34939 ACCACCTCTCAATCTTATAACTAAATGAAGCGTTGACTCGTTAGAAATATGATAACAGGC 34998 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | |||||| || || || | ||| |||||||| || |||||||||||||| Sbjct 34999 CAATGTATTTTCGTCTTCTAACTGCCTTCCATTAAAAATTAGTCGTTGTTGGTCAGGTGG 35058 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTT 171989 ||||||||||| || || |||||| || Sbjct 35059 GATTCCTTCTTTTTCGTGAATTTTAATT 35086 Score = 96.9 bits (106), Expect = 6e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| |||||||| | || | || | |||||||| ||||| | Sbjct 40846 ACCGCCTCTCAATCTTAAAACTAAATGAATCGTTGACTTGTCAGAAATATGATAATGAGC 40905 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | | ||||| || || || || ||| |||||| || || ||||| |||||||| Sbjct 40906 CAATGTTAAATCGTCCTCTAACTGCTTTCCACCAAAAACTAGTCGTTGTTGATCAGGTGG 40965 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTAC 171994 |||||||||||| ||||| | |||| ||| || Sbjct 40966 TATTCCTTCTTTTTCTTGAACTTTAAATTTCAC 40998 >seq12177 Length=61224 Score = 96.9 bits (106), Expect = 6e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||| ||||| |||||| ||| ||||| |||||||| |||| ||| ||||| Sbjct 22486 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCCGACGGTTCAACTTCC 22427 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 | ||||||||||||||| || | ||| || | ||| ||||||||| || Sbjct 22426 AAAGTAATGGTTTTACCCGTAAGTGTCTTGACGAAGATCTGCATTATA 22379 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| |||||||| ||||||| || | | || ||||||||||| || |||||||| |||| Sbjct 22624 AATGTTATAATCCGATAAAGTTCTTCCATCTTCCAATTGTTTCCCGGCAAAAATCAATCG 22565 Query 171947 CTGTTGGTCAGGTGGTATTCCT 171968 ||||||||| || || |||||| Sbjct 22564 CTGTTGGTCGGGCGGAATTCCT 22543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904969240006200