Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13894 165 7e-36 seq12471 156 4e-33 seq13827 102 7e-17 seq7061 91.5 1e-13 seq12614 86.0 6e-12 >seq13894 Length=1211295 Score = 165 bits (182), Expect = 7e-36 Identities = 174/228 (76%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| |||| || || || || ||||| ||||| ||| | || Sbjct 231945 ATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTCC 231886 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || || || ||||||||||||||||| || ||||| ||||| Sbjct 231885 GATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 231826 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||||||||| ||||| ||||| ||| ||| | |||||||||| ||| Sbjct 231825 CAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACAAC 231766 Query 24884 ATTCA-AAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||||||| || || | ||| |||| ||| | || || Sbjct 231765 ATCCAGAAAGGAATCGACCCTTCATCTTGTGCTGCGTTTGAGAGGCGG 231718 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||||| || || ||||| |||||||| ||| | | Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || || ||||| ||| Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| || ||||| || || || |||| ||| ||| | |||| ||||| ||| Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||||||||| || || ||||| ||||||||| | || || Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGG 231490 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| |||||||||| || || || |||||||| || | || Sbjct 232401 ATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCTTCC 232342 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || || ||||| || |||||||| || || || ||||| Sbjct 232341 GATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGATCAG 232282 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| || || ||||| || || || |||| ||| ||| | | || || || ||| Sbjct 232281 CAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTACAAC 232222 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || || ||||||||||| || || |||| ||||| || Sbjct 232221 ATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTT 232184 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| |||| || ||||| || || | ||||| ||| | | Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114 Query 24764 GACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| | ||| |||||||||||||| || || || || ||||| Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAA-ATCCAAGACAAAGAGGGCATCCCACCAGATCA 232055 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| |||||||| || || || || |||| ||| | | | |||| ||||| || Sbjct 232054 GCAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAA 231995 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || || | || |||| ||| | || || Sbjct 231994 CATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGG 231947 >seq12471 Length=105862 Score = 156 bits (172), Expect = 4e-33 Identities = 164/212 (77%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || |||||||||||||||||||| || | | | Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | |||||| ||||| |||||||||||||| || ||||| |||||| Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || |||||||| || || || ||||| |||| || | || ||| ||| ||||| | Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGA-TGGACGCACA-CTCAGCGATTACA 73163 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || || |||||||| || ||||||||| Sbjct 73162 ACATCCAGAAAGAATCGACGCTTCACTTGGTG 73131 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || ||||| |||||||| || | | | Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | |||||| || || ||||| || |||||||| || ||||||||| Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| |||||||| |||||| |||||||| | | | || || ||| Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || ||||| || || ||||||||| Sbjct 72415 ATTCAGAAAGAATCCACCCTTCACTTGGTG 72386 Score = 138 bits (152), Expect = 1e-27 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || | ||||| || | | Sbjct 72367 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACATTGGAAGTCGAGCCAAGT 72308 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||||||||| ||||| || ||||| ||| Sbjct 72307 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCGCCCGACCAA 72248 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || || ||||||||||| || ||||| || |||||| ||| ||| || ||||| Sbjct 72247 CAGCGATTGATCTTTGCTGGTAAACAACTCGAGGATGGTCG---CACATTGAGCGATTAC 72191 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||||||| || || || |||||||| ||| | | ||||| ||| Sbjct 72190 AACATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGGCTTCGCGGTGGC 72140 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| ||||| | ||||| || | | Sbjct 73630 ATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAGT 73571 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| |||||| Sbjct 73570 GATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCAA 73511 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| ||||| |||| ||| | | || || || ||| Sbjct 73510 CAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAAC 73451 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || ||||| || || ||||||||| Sbjct 73450 ATTCAGAAAGAATCAACTCTTCACTTGGTG 73421 Score = 125 bits (138), Expect = 6e-24 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || || || || || || ||| | ||||| || | | Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||||||||| || || || |||||| Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| | |||||||| |||||||| || || ||| ||| | || | | ||||| | Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCG-CACACTTAGC-GATTACA 72935 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||| || ||||| || || || ||||| || || Sbjct 72934 ACATTCAGAAAGAATCAACGCTTCATTTGGTTTTACG 72898 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || ||||||||||| | || || || | | | Sbjct 73858 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCAAGC 73799 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || |||||||| |||||||||||| Sbjct 73798 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAA 73739 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA-TTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || || || || ||||| || || | | || | | || || || Sbjct 73738 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTAGC-GACTACAA 73680 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || |||||||| | || ||||| ||| | ||||| ||||| Sbjct 73679 CATCCAGAAAGAATCGACCTTGCATTTGGTATTGAGGTTGCGAGGAGG 73632 Score = 109 bits (120), Expect = 5e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || | || || || || || || | || || ||| | | Sbjct 72823 ATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGT 72764 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 72763 GACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCAA 72704 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || |||||||| || || || ||||| |||| ||| ||| ||| || ||||| Sbjct 72703 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCG---TACATTGAGCGATTAC 72647 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || || || ||||| | || ||| | || || Sbjct 72646 AACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGG 72597 >seq13827 Length=723868 Score = 102 bits (112), Expect = 7e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 139120 CTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGA 139179 ||||| |||| |||||||| ||||||||||| || |||||||| |||||||||| || Sbjct 454825 CTGTACTCGATAATTTCGGTGCACAAATTACTGCATTTGATCGTTCCTAAATTTTTCTGG 454766 Query 139180 TTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 || |||||||| || | || || ||||| || |||||||| || |||||||| || Sbjct 454765 TTACTTTTTCGATTGCTCGCGTCCTTGTACGTCAAGTACGGTGTACCTGTTTCCACCTG 454707 >seq7061 Length=6671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||||||| ||||||| |||| || ||| | || ||| | || || | | Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGAGCATTCGG 2823 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 | || | || | ||| ||||||| ||||| |||||||||||| | || || || | Sbjct 2824 ATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGC 2883 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTC--AGATTATAA 24882 || | || |||||||| || |||||| | || ||| || |||| | || |||||| || Sbjct 2884 AAAGATTAATCTTTGCTGGTAAACAGTTAGAAGAT--GAAAAACGTCTCGAAGATTACAA 2941 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||| || |||| || || || |||| ||||| || Sbjct 2942 TATACAGAAAGAAAACACTTTACATTTAGTATTAAGATTACGCGGTGG 2989 >seq12614 Length=760689 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 |||||| ||||| ||||||||||| ||||| ||||| || |||||||| || ||| | Sbjct 131260 AGGAATTCCTCCGGATCAACAACGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 131201 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 | |||| || ||||||||||| ||||| ||||| | || | |||||| Sbjct 131200 TACGTTGTCCGACTATAACATTCAGAAGGAGTCGACGTTGCATCTTGTGTTG 131149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449814711990920