Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11814 165 1e-34 seq3343 161 2e-33 seq13860 102 1e-15 seq2563 102 1e-15 seq9928 87.8 3e-11 seq654 87.8 3e-11 >seq11814 Length=1053 Score = 165 bits (182), Expect = 1e-34 Identities = 180/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 816 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCAAGCTCTCCAGGGA 875 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| ||||| |||||||||||||| ||||| | | ||| || ||||||| |||| Sbjct 876 GGATGAGGCGGACGGCGGTCTGGATTTCGCGAGAGGAGATGGTCGATCGCTTGTTGTAGT 935 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||| | |||| | |||| | |||||| || |||||||| Sbjct 936 GAGCG--AGACGAGAAGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 993 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||||| || ||| ||||| ||||||||||| || Sbjct 994 CATGATCGACATAGCCTTGGAGGAGACTCCGGTGTCAGGGTGGACCTGCTTGAGGAC 1050 >seq3343 Length=1120 Score = 161 bits (178), Expect = 2e-33 Identities = 180/237 (76%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 2 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGC-TGGCAAGCTCTCCAGGGA 60 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||| ||||| |||||||||||||| ||||| | | ||| || ||||||| |||| Sbjct 61 GGATGAGGCGGACGGCGGTCTGGATTTCGCGAGAGGAGATGGTCGATCGCTTGTTGTAGT 120 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||| | |||| | |||| | |||||| || |||||||| Sbjct 121 GAGCG--AGACGAGAAGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 178 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||||| || ||| ||||| ||||||||||| || Sbjct 179 CATGATCGACATAGCCTTGGAGGAGACTCCGGTGTCAGGGTGGACCTGCTTGAGGAC 235 >seq13860 Length=567148 Score = 102 bits (112), Expect = 1e-15 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528 ||||||||||| ||||| ||||| || || |||||||| | |||| ||||||| || Sbjct 542490 TTGTACTTGGTTACGGCTTTGGTCCCTTCACTAACGGCGTGTTTAGCCAATTCGCCGGGC 542549 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | | || || ||||||||||| || || | | || || || || ||| | | Sbjct 542550 AGAACGAGTCGAACGGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 542609 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647 |||||| || || ||||| ||| || |||| |||||||| | ||||| ||| Sbjct 542610 TTCGCCAGACGAGACGCTTCGGTCGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 542668 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677 |||||||||||||| |||| | || ||||| Sbjct 542669 CATGATCGACATCGCTTTGGTCGACATGCC 542698 >seq2563 Length=87314 Score = 102 bits (112), Expect = 1e-15 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528 ||||||||||| ||||| ||||| || || |||||||| | |||| ||||||| || Sbjct 61639 TTGTACTTGGTTACGGCTTTGGTCCCTTCACTAACGGCGTGTTTAGCCAATTCGCCGGGC 61580 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | | || || ||||||||||| || || | | || || || || ||| | | Sbjct 61579 AGAACGAGTCGAACGGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 61520 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647 |||||| || || ||||| ||| || |||| |||||||| | ||||| ||| Sbjct 61519 TTCGCCAGACGAGTCGCTTCGGTCGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 61461 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677 |||||||||||||| |||| | || ||||| Sbjct 61460 CATGATCGACATCGCTTTGGTCGACATGCC 61431 Score = 96.9 bits (106), Expect = 5e-14 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528 ||||||||||| ||||| ||||| || || |||||||| | |||| ||||||| || Sbjct 69797 TTGTACTTGGTCACGGCTTTGGTCCCTTCACTAACGGCGTGTTTAGCCAATTCGCCGGGC 69738 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | | || || ||||||||||| || || | | || || || || ||| | | Sbjct 69737 AGAACGAGTCGAACGGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 69678 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647 |||||| || || |||| ||| || |||| |||||||| | ||||| ||| Sbjct 69677 TTCGCCAGACGAGTCGCTTCGGACGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 69619 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677 |||||||||||||| |||| | || ||||| Sbjct 69618 CATGATCGACATCGCTTTGGTCGACATGCC 69589 >seq9928 Length=54596 Score = 87.8 bits (96), Expect = 3e-11 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528 ||||||||||| ||||| ||||| || || |||||||| | |||| ||| ||| || Sbjct 5836 TTGTACTTGGTCACGGCTTTGGTTCCTTCACTAACGGCGTGTTTAGCCAATTCCCCGGGC 5895 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | | || || || |||||||| || || | | || || || || ||| | | Sbjct 5896 AGAACGAGTCGAACTGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 5955 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647 |||||| || || |||| ||| || |||| |||||||| | ||||| ||| Sbjct 5956 TTCGCCAGACGAGACGCTTCGGATGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 6014 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677 |||||||||||||| |||| | || ||||| Sbjct 6015 CATGATCGACATCGCTTTGGTCGACATGCC 6044 >seq654 Length=271643 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||| | |||| ||| || | | Sbjct 71658 TGTACTTGGTGACGGCCTTGGTCCCCTCACTCACAGCGTGCTTAGCCAATTCTCCTGGAA 71599 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| || |||||||| || | ||||| ||||||||| Sbjct 71598 GAAGCAATCGAACGGCAGTTTGGATCTCACGACTCGTAATCGTCGAGCGCTTGTTGTAAT 71539 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | |||| | |||| ||||||||||| || ||||| Sbjct 71538 GGGCCAATCGCGACGCTTCAGCTGCGATTCTCTCGAAAATGTCGTTGACGAAGCTGTTCA 71479 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || || || || ||||| ||||| |||||||| || |||| Sbjct 71478 TGATACTCATAGCCTTCGATGAAATTCCAGTATCGGGATGCACTTGCTTGAGTACTTTGT 71419 Query 1485710 A 1485710 | Sbjct 71418 A 71418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914678545345421