Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq11814 165 1e-34
seq3343 161 2e-33
seq13860 102 1e-15
seq2563 102 1e-15
seq9928 87.8 3e-11
seq654 87.8 3e-11
>seq11814
Length=1053
Score = 165 bits (182), Expect = 1e-34
Identities = 180/237 (76%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| |||| || || || | |
Sbjct 816 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCAAGCTCTCCAGGGA 875
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
||| ||||| |||||||||||||| ||||| | | ||| || ||||||| ||||
Sbjct 876 GGATGAGGCGGACGGCGGTCTGGATTTCGCGAGAGGAGATGGTCGATCGCTTGTTGTAGT 935
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || || ||||| | |||| | |||| | |||||| || ||||||||
Sbjct 936 GAGCG--AGACGAGAAGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 993
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||| | ||| ||||| || ||| ||||| ||||||||||| ||
Sbjct 994 CATGATCGACATAGCCTTGGAGGAGACTCCGGTGTCAGGGTGGACCTGCTTGAGGAC 1050
>seq3343
Length=1120
Score = 161 bits (178), Expect = 2e-33
Identities = 180/237 (76%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| |||| || || || | |
Sbjct 2 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGC-TGGCAAGCTCTCCAGGGA 60
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
||| ||||| |||||||||||||| ||||| | | ||| || ||||||| ||||
Sbjct 61 GGATGAGGCGGACGGCGGTCTGGATTTCGCGAGAGGAGATGGTCGATCGCTTGTTGTAGT 120
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || || ||||| | |||| | |||| | |||||| || ||||||||
Sbjct 121 GAGCG--AGACGAGAAGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 178
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||||| | ||| ||||| || ||| ||||| ||||||||||| ||
Sbjct 179 CATGATCGACATAGCCTTGGAGGAGACTCCGGTGTCAGGGTGGACCTGCTTGAGGAC 235
>seq13860
Length=567148
Score = 102 bits (112), Expect = 1e-15
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528
||||||||||| ||||| ||||| || || |||||||| | |||| ||||||| ||
Sbjct 542490 TTGTACTTGGTTACGGCTTTGGTCCCTTCACTAACGGCGTGTTTAGCCAATTCGCCGGGC 542549
Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588
| | || || ||||||||||| || || | | || || || || ||| | |
Sbjct 542550 AGAACGAGTCGAACGGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 542609
Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647
|||||| || || ||||| ||| || |||| |||||||| | ||||| |||
Sbjct 542610 TTCGCCAGACGAGACGCTTCGGTCGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 542668
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677
|||||||||||||| |||| | || |||||
Sbjct 542669 CATGATCGACATCGCTTTGGTCGACATGCC 542698
>seq2563
Length=87314
Score = 102 bits (112), Expect = 1e-15
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528
||||||||||| ||||| ||||| || || |||||||| | |||| ||||||| ||
Sbjct 61639 TTGTACTTGGTTACGGCTTTGGTCCCTTCACTAACGGCGTGTTTAGCCAATTCGCCGGGC 61580
Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588
| | || || ||||||||||| || || | | || || || || ||| | |
Sbjct 61579 AGAACGAGTCGAACGGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 61520
Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647
|||||| || || ||||| ||| || |||| |||||||| | ||||| |||
Sbjct 61519 TTCGCCAGACGAGTCGCTTCGGTCGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 61461
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677
|||||||||||||| |||| | || |||||
Sbjct 61460 CATGATCGACATCGCTTTGGTCGACATGCC 61431
Score = 96.9 bits (106), Expect = 5e-14
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528
||||||||||| ||||| ||||| || || |||||||| | |||| ||||||| ||
Sbjct 69797 TTGTACTTGGTCACGGCTTTGGTCCCTTCACTAACGGCGTGTTTAGCCAATTCGCCGGGC 69738
Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588
| | || || ||||||||||| || || | | || || || || ||| | |
Sbjct 69737 AGAACGAGTCGAACGGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 69678
Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647
|||||| || || |||| ||| || |||| |||||||| | ||||| |||
Sbjct 69677 TTCGCCAGACGAGTCGCTTCGGACGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 69619
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677
|||||||||||||| |||| | || |||||
Sbjct 69618 CATGATCGACATCGCTTTGGTCGACATGCC 69589
>seq9928
Length=54596
Score = 87.8 bits (96), Expect = 3e-11
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528
||||||||||| ||||| ||||| || || |||||||| | |||| ||| ||| ||
Sbjct 5836 TTGTACTTGGTCACGGCTTTGGTTCCTTCACTAACGGCGTGTTTAGCCAATTCCCCGGGC 5895
Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588
| | || || || |||||||| || || | | || || || || ||| | |
Sbjct 5896 AGAACGAGTCGAACTGCGGTCTGAATGTCTCTGAGGCTCATAGTCGGTCGTTTGCTGATT 5955
Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA-CAAACGAGTT 1485647
|||||| || || |||| ||| || |||| |||||||| | ||||| |||
Sbjct 5956 TTCGCCAGACGAGACGCTTCGGATGCGAGTCGTTCGAAGATGTCGTTCATCAAAC-TGTT 6014
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCC 1485677
|||||||||||||| |||| | || |||||
Sbjct 6015 CATGATCGACATCGCTTTGGTCGACATGCC 6044
>seq654
Length=271643
Score = 87.8 bits (96), Expect = 3e-11
Identities = 164/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || |||||| | |||| ||| || | |
Sbjct 71658 TGTACTTGGTGACGGCCTTGGTCCCCTCACTCACAGCGTGCTTAGCCAATTCTCCTGGAA 71599
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || ||||| || |||||||| || | ||||| |||||||||
Sbjct 71598 GAAGCAATCGAACGGCAGTTTGGATCTCACGACTCGTAATCGTCGAGCGCTTGTTGTAAT 71539
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| |||| || || || | |||| | |||| ||||||||||| || |||||
Sbjct 71538 GGGCCAATCGCGACGCTTCAGCTGCGATTCTCTCGAAAATGTCGTTGACGAAGCTGTTCA 71479
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | || || || || ||||| ||||| |||||||| || ||||
Sbjct 71478 TGATACTCATAGCCTTCGATGAAATTCCAGTATCGGGATGCACTTGCTTGAGTACTTTGT 71419
Query 1485710 A 1485710
|
Sbjct 71418 A 71418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7914678545345421
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |