Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq7061 127 3e-24 seq13894 123 4e-23 seq12471 114 2e-20 seq13384 89.7 8e-13 >seq7061 Length=6671 Score = 127 bits (140), Expect = 3e-24 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| ||||| || ||| | || || || ||| || ||| | Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGAGCATTCGG 2823 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || || || | ||| | || || ||| ||||||||| || |||| || || | Sbjct 2824 ATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGC 2883 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGT-TAACAGATTATAAT 146210 ||||| | || ||||| |||||||| ||||| ||| | | ||||| | |||||| ||| Sbjct 2884 AAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAA-AACGTCTCGAAGATTACAAT 2942 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG--TAAATAAAT 146266 ||||| |||||| ||| | |||||||||||| ||||| | || || |||| |||| Sbjct 2943 ATACAGAAAGAAAACACTTTACATTTAGTATTAAGATTACGCGGTGGTTTAAAAAAAT 3000 >seq13894 Length=1211295 Score = 123 bits (136), Expect = 4e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| ||||| ||||| || ||||| | || || |||| | Sbjct 231715 TGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCGG 231656 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| || ||||||||||| |||||||| |||| Sbjct 231655 ACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAAC 231596 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || || ||||| || ||| |||| || | ||||| || | Sbjct 231595 AACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAACA 231536 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||||||| | ||||| || || ||||| ||||| || Sbjct 231535 TCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGG 231490 Score = 113 bits (124), Expect = 7e-20 Identities = 163/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| ||||| || || || || || |||| || |||| | || Sbjct 231944 TGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTCCG 231885 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || || ||||| ||| |||||||||||||| || ||||| | Sbjct 231884 ATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGC 231825 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| ||||||||| | || ||| |||| || ||||||| || | Sbjct 231824 AGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACAACA 231765 Query 146212 TACA-AAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||| |||||||| | ||| | || | || || ||||| |||| Sbjct 231764 TCCAGAAAGGAATCGACCCTTCATCTTGTGCTGCGTTTGAGAGGCGGTA 231716 >seq12471 Length=105862 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||| || |||||| | || || || | | || Sbjct 72594 TGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGCG 72535 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||||||| |||||| ||| ||| ||||| || ||||||||||||| Sbjct 72534 ACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAAC 72475 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || |||||||| |||||||| || || ||| | || |||| || || || | Sbjct 72474 AGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAACA 72415 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | || || || | | || ||||| |||| Sbjct 72414 TTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGGTA 72367 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||| | || |||||||| ||||| | || || || | | | Sbjct 73629 TGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAGTG 73570 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || ||| |||||||| ||||| || ||||||| Sbjct 73569 ATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCAAC 73510 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || || || ||||||||||| || ||| | | || || | || || || | Sbjct 73509 AGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAACA 73450 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | || || || Sbjct 73449 TTCAGAAAGAATCAACTCTTCACTTGGT 73422 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || |||||||| ||||| | || || || | | || Sbjct 73339 TGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGCG 73280 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | ||||||||| || || ||| |||||||| ||||| || ||||||| Sbjct 73279 ACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAAC 73220 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| || || |||||||| || ||| | || | | ||||| || | Sbjct 73219 AGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAACA 73160 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||||||||| | || || || | | || ||||| |||| Sbjct 73159 TCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGGTA 73112 >seq13384 Length=139451 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| ||| ||| ||||||| || |||| ||| || | || || || | || Sbjct 38038 CAAATTTTCGTAACGACATTAAATGGGAAAATAATAACCTTAGAAGTTGAGATGCAAGAA 37979 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| |||| ||||| ||||||||||| ||||| || ||| | || |||||| Sbjct 37978 ACAATTGAAAACATAAAACATAAAATACAAGATAAAGGTGGATGGCCAACTGACCAACAA 37919 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 | | ||||||| ||||| | || || ||| || ||| || | || |||||||| Sbjct 37918 CAATTGGTTTTTGCTGGTAAGCTTTTGGAAGATTATCAAACATTGTCCGACTATAATATT 37859 Query 146214 CAAAAAGAATCGACTATCCATTTA 146237 ||||||||| | || | |||||| Sbjct 37858 CAAAAAGAAGCAACCCTGCATTTA 37835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786021558667880