Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 161 8e-35
seq12471 156 3e-33
seq7061 86.0 5e-12
>seq13894
Length=1211295
Score = 161 bits (178), Expect = 8e-35
Identities = 174/229 (76%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTT-TGAATGTTATAATCCGC 29618
|| || |||||||||||||| | |||||| || ||||| ||| || ||||| ||||| |
Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||| || ||| || |||||||| || ||| | ||||| | ||||||||||| ||
Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| || ||||||||||| | ||| || || |||| | || || ||| |||| ||
Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|||||| || || || || |||||||| ||||| || || |||||||||
Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 159 bits (176), Expect = 3e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || ||||||||||| || | |||||| || || ||||| || ||||| ||||| |
Sbjct 231946 TCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGA 232005
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||| || ||| || | ||| || || || | ||||||| ||||||||| || ||
Sbjct 232006 CAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGG 232065
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| |||||||||||||| | ||| || || |||| | ||||| || |||| ||
Sbjct 232066 GATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGAC 232125
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| | ||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct 232126 TTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 149 bits (164), Expect = 5e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || ||||||| |||| |||||| || ||||| || || ||||| || || |
Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| || | ||| ||||| ||| | || |||| |||||||||||| ||
Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| ||||| || || | ||| || || |||| | || || ||| | || |||
Sbjct 232295 ATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACT 232354
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| |||||||| || || || ||||||||||| ||||| |||||||||||
Sbjct 232355 TCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
>seq12471
Length=105862
Score = 156 bits (172), Expect = 3e-33
Identities = 162/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATC 29636
||||| || |||||||| || ||||| ||||| ||||| | ||||| ||||| ||| ||
Sbjct 72159 ACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATG-TGCGACCATCCTC 72217
Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696
||||||||| |||||| | ||||||| || || || |||||||| ||||||||||||||
Sbjct 72218 GAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTCTTG 72277
Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
| || |||||| |||| | |||||| | || ||||| | || || || ||
Sbjct 72278 GATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGTCTT 72337
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||| | |||||| ||||| ||||||||
Sbjct 72338 GCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 147 bits (162), Expect = 2e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||||||||| |||||||| |||||||| ||||| || |||||| ||| |||
Sbjct 72904 ACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCG 72963
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|||||||| |||||| | || | | || ||||| || || || || |||||||||||
Sbjct 72964 AGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGG 73023
Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757
| || ||||||| |||| | ||||||| | | || ||||| | || || || |||
Sbjct 73024 ATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTG 73083
Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| | |||||| || || || |||||
Sbjct 73084 CCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || ||||| | |||||||| |||||||| |||||||| || ||||| |||||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || | |||||| ||||| | ||||| | || |||||||| |||
Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || ||||||||||| ||| || | ||| ||| | || | |||||| | || ||
Sbjct 73234 ATCCCTTCTTTGTCTTG-AATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAAC 73292
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| || || |||||||| ||||| | |||||| ||||| ||||||||
Sbjct 73293 TTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGA 29630
|| |||||||| ||||| || |||||||| |||||||| || || | ||| | |||||
Sbjct 73416 CGGAGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAG-TGCGACC 73474
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | |||||| || || | ||||| | || ||||| || ||||| || |||||
Sbjct 73475 ATCTTCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTT 73534
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||| ||| | || | || ||| | || ||||| | || ||
Sbjct 73535 GTCTTGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAAT 73594
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||||| ||||| | ||||| || || |||||||||
Sbjct 73595 GGTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || ||||| | |||||||| ||||| ||||||||||| |||||||| || ||
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || | ||||| || ||| | |||| | || ||||| || ||
Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || || ||||| |||||| | ||| ||| | || | ||||| | || ||
Sbjct 72489 ATTCCTTCCTTATCTTG-AATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| ||||| || || || ||||| | ||||| ||||| ||||||||
Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | ||| | || |||||||| | || |||||||| || ||||| || ||
Sbjct 73631 TCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCT 73690
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| ||||| || ||||| || || ||||| | ||||||| || ||||| || ||
Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
||| || || || || || ||| || | || || | || | ||||| | || |
Sbjct 73751 AATTCCTTCCTTATCCTG-AATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCA 73809
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || | ||| |||||||| ||||| | |||||||||||| ||||||||
Sbjct 73810 CCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
>seq7061
Length=6671
Score = 86.0 bits (94), Expect = 5e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700
||||| |||||| | || ||||||||||| ||||| | || || ||||| ||||| |
Sbjct 2908 TGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGAATC 2849
Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760
|||| ||||| | || | || || ||| | || || | ||||| | ||| ||
Sbjct 2848 TTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAATCTATCGTTATGGATTTCCCC 2789
Query 29761 GTTAAGGTTTTAACAAATATCTGCA 29785
||||| ||||||||||| |||||||
Sbjct 2788 GTTAAAGTTTTAACAAAGATCTGCA 2764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385150002473199
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |