Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_023571.1
Length=46243
Score E
Sequences producing significant alignments: (Bits) Value
seq3995 143 8e-30
>seq3995
Length=1112
Score = 143 bits (158), Expect = 8e-30
Identities = 404/606 (67%), Gaps = 27/606 (4%)
Strand=Plus/Minus
Query 40085 TCTCTCGGAGTCAATTTTCTTATTC---TTTCATCTTTTGTCCTGATTAATGGAACATTA 40141
|| || ||||| | |||||| || | ||| |||||| ||||| || || |||
Sbjct 640 TCCCTAGGAGTTAGTTTTCTAATGCCTATTTTATCTTTA------ATTAAAGGTACGTTA 587
Query 40142 TGTCCGCCTGTACCCATATTGGCCGTCAAAGTAGGGACTACGCCACTTTTGTTTTCTCTA 40201
|| || ||||| |||||||| || || ||||||||| | | | |||| |||||||||
Sbjct 586 TGACCACCTGTTCCCATATTAGCTGTTAAAGTAGGGCAAAGGTTATTTTTATTTTCTCTA 527
Query 40202 ACATATTGTCTCCGCCACTGATAAATACTATCAGGATTTTTCATTTCTTCTTCCAACTGA 40261
||||| ||||| | |||||| |||| | |||| || | |||||| || |||
Sbjct 526 ACATAGTGTCTTCTCCACTGGTAAAAAGTATCTTCTCTTGTTATTTCTCTTTTCAAAATT 467
Query 40262 TCATAGAAAGCT-TGTTTGCCTTGTTTATAATAAAATTTGTCTGCTACGTTTTTATTGAA 40320
||| | ||| || | |||| ||||| ||||||| || | ||| ||| | | |
Sbjct 466 TCAAAAAAAACTATATTTG------TTATAGTAAAATTCTTCAGATAC-TTTATCCTCCA 414
Query 40321 ATCAATAACATCTGAAAG-TCTAGTTTTTAATTTAATTGGAGCTGGAAAAGAAAATTTAT 40379
|| ||| | | || || ||| | | ||||||| | |||||| ||| | ||
Sbjct 413 AT--ATATC-TTGGATAGATCTTG-TGTTAATTT-CTCTTTTTTGGAAATTTAAAATCAT 359
Query 40380 CA-AATGTTTGTTTGTCTTTGAAGCCGACAACATAAATCCTTTCTCGATTCTGCGGTATA 40438
| |||| | || | | || || |||| ||||| |||||||| ||| |||||||||
Sbjct 358 TACAATG-GTATTGATTTAAAAACCCTACAATATAAACCCTTTCTCTATTTTGCGGTATA 300
Query 40439 TTGCCATAATCCTTAGCATTGAGAACTTTCCATTTAATATAGTACCCGGCGTGAACCAGA 40498
| || | | | ||| ||||||| ||||||||| || || | | ||
Sbjct 299 TCTGCACAGTTACATGTATTTAGAACTTCGTATTTAATATGATAGCCAACATTTGTTAGG 240
Query 40499 TATTCGCGGATAACTTTGAAGGTATTTCCATGATCGTGTGTTACCAGATTTTTAACGTTC 40558
|| || | | | | ||||| || || | || || | | | |||||| ||||||
Sbjct 239 TAATCTAATAAATATCTTAAGGTTTTACCTTCATTATGAGACAGTAAATTTTTTACGTTC 180
Query 40559 TCCaaaaaaaCAACTTCCGGCTGTTTTGCTTTTATAATTCTTAATGCTTCGAAAAACAA- 40617
|| |||||||||| || || || | | || |||| | || | || ||| ||||
Sbjct 179 TCTAAAAAAACAATTTTAGGTCTTTGAGACTCTAAAATTTTAAACACCTC-AAATACAAT 121
Query 40618 ACTGCCTCTTTCGTCTTCCAAACCTTTTCTATATCCTGCAATTGAAAAAGGTTGGCAGGG 40677
| |||||||| ||||| || |||||||||| ||||| || || |||| |||||| ||
Sbjct 120 AGAACCTCTTTCATCTTCAAATCCTTTTCTATGACCTGCTATAGAGAAAGCTTGGCAAGG 61
Query 40678 GAACCC 40683
||| ||
Sbjct 60 GAAACC 55
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147830121411190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |