Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_023571.1 Length=46243 Score E Sequences producing significant alignments: (Bits) Value seq3995 143 8e-30 >seq3995 Length=1112 Score = 143 bits (158), Expect = 8e-30 Identities = 404/606 (67%), Gaps = 27/606 (4%) Strand=Plus/Minus Query 40085 TCTCTCGGAGTCAATTTTCTTATTC---TTTCATCTTTTGTCCTGATTAATGGAACATTA 40141 || || ||||| | |||||| || | ||| |||||| ||||| || || ||| Sbjct 640 TCCCTAGGAGTTAGTTTTCTAATGCCTATTTTATCTTTA------ATTAAAGGTACGTTA 587 Query 40142 TGTCCGCCTGTACCCATATTGGCCGTCAAAGTAGGGACTACGCCACTTTTGTTTTCTCTA 40201 || || ||||| |||||||| || || ||||||||| | | | |||| ||||||||| Sbjct 586 TGACCACCTGTTCCCATATTAGCTGTTAAAGTAGGGCAAAGGTTATTTTTATTTTCTCTA 527 Query 40202 ACATATTGTCTCCGCCACTGATAAATACTATCAGGATTTTTCATTTCTTCTTCCAACTGA 40261 ||||| ||||| | |||||| |||| | |||| || | |||||| || ||| Sbjct 526 ACATAGTGTCTTCTCCACTGGTAAAAAGTATCTTCTCTTGTTATTTCTCTTTTCAAAATT 467 Query 40262 TCATAGAAAGCT-TGTTTGCCTTGTTTATAATAAAATTTGTCTGCTACGTTTTTATTGAA 40320 ||| | ||| || | |||| ||||| ||||||| || | ||| ||| | | | Sbjct 466 TCAAAAAAAACTATATTTG------TTATAGTAAAATTCTTCAGATAC-TTTATCCTCCA 414 Query 40321 ATCAATAACATCTGAAAG-TCTAGTTTTTAATTTAATTGGAGCTGGAAAAGAAAATTTAT 40379 || ||| | | || || ||| | | ||||||| | |||||| ||| | || Sbjct 413 AT--ATATC-TTGGATAGATCTTG-TGTTAATTT-CTCTTTTTTGGAAATTTAAAATCAT 359 Query 40380 CA-AATGTTTGTTTGTCTTTGAAGCCGACAACATAAATCCTTTCTCGATTCTGCGGTATA 40438 | |||| | || | | || || |||| ||||| |||||||| ||| ||||||||| Sbjct 358 TACAATG-GTATTGATTTAAAAACCCTACAATATAAACCCTTTCTCTATTTTGCGGTATA 300 Query 40439 TTGCCATAATCCTTAGCATTGAGAACTTTCCATTTAATATAGTACCCGGCGTGAACCAGA 40498 | || | | | ||| ||||||| ||||||||| || || | | || Sbjct 299 TCTGCACAGTTACATGTATTTAGAACTTCGTATTTAATATGATAGCCAACATTTGTTAGG 240 Query 40499 TATTCGCGGATAACTTTGAAGGTATTTCCATGATCGTGTGTTACCAGATTTTTAACGTTC 40558 || || | | | | ||||| || || | || || | | | |||||| |||||| Sbjct 239 TAATCTAATAAATATCTTAAGGTTTTACCTTCATTATGAGACAGTAAATTTTTTACGTTC 180 Query 40559 TCCaaaaaaaCAACTTCCGGCTGTTTTGCTTTTATAATTCTTAATGCTTCGAAAAACAA- 40617 || |||||||||| || || || | | || |||| | || | || ||| |||| Sbjct 179 TCTAAAAAAACAATTTTAGGTCTTTGAGACTCTAAAATTTTAAACACCTC-AAATACAAT 121 Query 40618 ACTGCCTCTTTCGTCTTCCAAACCTTTTCTATATCCTGCAATTGAAAAAGGTTGGCAGGG 40677 | |||||||| ||||| || |||||||||| ||||| || || |||| |||||| || Sbjct 120 AGAACCTCTTTCATCTTCAAATCCTTTTCTATGACCTGCTATAGAGAAAGCTTGGCAAGG 61 Query 40678 GAACCC 40683 ||| || Sbjct 60 GAAACC 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147830121411190