Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq13235 297 1e-74
seq14046 118 8e-21
seq12593 118 8e-21
seq13338 93.3 3e-13
seq14070 91.5 1e-12
seq13938 91.5 1e-12
seq12159 87.8 1e-11
>seq13235
Length=296648
Score = 297 bits (328), Expect = 1e-74
Identities = 609/897 (68%), Gaps = 14/897 (2%)
Strand=Plus/Minus
Query 281759 ATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTT 281818
|| || ||||| | |||||| || || ||||| |||||||| || || | ||| |||
Sbjct 66674 ATCGCGGCTTGCACAGCAGCGCCGTAAGCAACTGCTTCATCTGGGTTGATGCTTTTGTTT 66615
Query 281819 AGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGAT 281878
| || ||| ||||| ||||||| | ||| |||| | | || ||||| || | |||
Sbjct 66614 AATTCTTTGCCATTAAAAAAATCTTGAAGCAGTTTTTGGATTTTGGGAATTCGGGTTGAA 66555
Query 281879 CCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACT 281938
|||||||| | ||||| || || || || | ||||||||| |||| ||| ||| |
Sbjct 66554 CCTCCAACAAGAACAATGTCGTGAACTTGAGCTTTATCCAGCTTTGCATCGCGTAAGGCC 66495
Query 281939 TTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 281998
|| |||||||| || || | || ||||||||| | | |||||| || |||||
Sbjct 66494 TTCTCAACGGGGTCCAGTGTTGATCGAAACAAGTCGGCGTTCAATTCTTCAAACCTAGCT 66435
Query 281999 CTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAG 282056
| |||| | || | || || || | |||||||| | ||||||| || || | |
Sbjct 66434 CGGGTAATCG--ACGTGTAAAAGTCGACGCCTTCGAATAGGGAATCAATCTCGATGCTCG 66377
Query 282057 TTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA 282116
|||||| || |||| | | || |||||||| |||||||| || ||||| | |
Sbjct 66376 CTTGAGTACTGGATGATAAGGTCCTCTTCGCACGTTCGCATGCTGTTCTAAGTCTCCTCA 66317
Query 282117 AGGCT--TTTGCT-GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACAC 282173
||| |||| | || | ||||||| |||| | |||||||||||| |||| |||
Sbjct 66316 CGGCGCGTTTGTTAGA---AGTCAAATCCTTTTTGTGTTTTCTCTTGAACTCTTGTACAA 66260
Query 282174 ACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGT 282231
| ||| | || | || ||||| |||||||| || ||||| | |||| ||| | ||
Sbjct 66259 A--ATGGTTGACCATTCGGTTATCGAAATCTTCTCCGCCCAAATGGGTATCTCCAGCGGT 66202
Query 282232 AGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACC 282291
| | |||||| |||| || ||||||| | ||||| | ||||| ||| |||||
Sbjct 66201 CGATTTTACTTCAAAAATGCCGTCTTCAATGGTCAAAATCGACACATCGAAGGTACCACC 66142
Query 282292 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGC 282351
|||| ||| ||||| || || || ||| | || || || || || || ||
Sbjct 66141 GCCCAAATCGAAAATGAGCACGTTTCGCTCTCCACCAACCTTCTTGTCCAGTCCGTAAGC 66082
Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411
|| |||||| || || || || || || || | | ||||| | ||||||||| | ||
Sbjct 66081 AATAGCAGCGGCTGTGGGCTCGTTGATGATGCGAAGCACATTCAAACCAGCAATGGTGCC 66022
Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
||||| || |||||||| | ||| ||||||||||| || || || ||||| | || ||
Sbjct 66021 GGCATCCTTGGTGGCTTGGCGTTGGGAATCGTTAAAGTAAGCTGGGACAGTGACGACTGC 65962
Query 282472 ATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCAT 282531
|| |||| ||| || | ||||| || |||| |||||||| |||||| |||
Sbjct 65961 ATTATTTACAGTTTTGCCTAAGTAAGCTTCGGCGGTTTCCTTCATTTTGGTTAAAACCAT 65902
Query 282532 TGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATA 282591
|| || |||| ||| || || | ||| ||| || ||| || | | |
Sbjct 65901 GGAGGAGATTTCTTCGGGGAAAAAGGTCTTCATTTCGCCTTTGTATTCGACCTTGATTTT 65842
Query 282592 TGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAAC 282648
||||| ||| | | || || | ||||||||||| |||||| || ||||| ||
Sbjct 65841 AGGTTTGCCGCCATCGCTGATGACATCAAATGGCCAATGTTTCATGTCAGATTGCAC 65785
>seq14046
Length=357214
Score = 118 bits (130), Expect = 8e-21
Identities = 131/175 (75%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| |||||||| |||| || |||| ||| ||||| ||| |||| ||||| ||||| ||
Sbjct 10015 GGCTCATTAATGATTCGCATAACAACAAGTCCAGCTATTGTTCCAGCATCCTTAGTTGCC 10074
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | ||| | |||||||||||| ||||| ||||| | ||| |||| | |||| |||
Sbjct 10075 TGGCGTTGAGCATCGTTAAAATAAGCAGGTACAGTCACAACAGCATGCGACACTTTCTTT 10134
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542
|| | |||||| || ||| ||||||||| | |||| ||| | |||||||
Sbjct 10135 CCCAAATAAGCTTCGGCAATTTCCTTCATTTTAATCAAAACCATCGCGGAAATTT 10189
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/152 (73%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730
|| ||||||||||| ||||| |||| || || |||||| | ||||| |||
Sbjct 10376 CCGATTAATCGTTTAGCATCGAAAACCGTGTTTTCGGGATTACTAGTCAATTGATTTTTC 10435
Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTC---TGTAAATGAAACATATGATGGAGTTGTG 282787
|| ||||||||||| ||| ||||| || ||||| | || ||||| ||||| ||
Sbjct 10436 GCGGCATCTCCAATTAGACGTTCTCCTTCCGGAGTAAAAGCCACGTATGAAGGAGTGATG 10495
Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAAC 282819
|| || ||||||||||| |||||||| || ||
Sbjct 10496 CGGTTGCCTTGATCATTGGCAATAATCTCTAC 10527
>seq12593
Length=225266
Score = 118 bits (130), Expect = 8e-21
Identities = 127/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185
||||||| ||| || ||||||||||| ||||| |||||| |||| ||||| | |||||
Sbjct 76290 GTCGATTTTTCATCGCCAAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGCTCAACG 76231
Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245
||||| ||||| ||||||| | || | || | ||| || ||||| | |||
Sbjct 76230 ATTATCGGTGATAGTATTTGTCGAGTTCTTGAGTTTGTTGGTCATAATGTTACCAGGATT 76171
Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293
||||| || ||||| ||||| || |||||||| ||| |||||||| ||
Sbjct 76170 AATCACGTCGGTGACTGGGGCACGCAATTCGGCATGCTAATTGCTCAT 76123
>seq13338
Length=646138
Score = 93.3 bits (102), Expect = 3e-13
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 432277 AAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATA 432336
||||||||| ||| |||||||| | || | |||||||||||||||||||||||||||
Sbjct 164435 AAAGATTGAAAGGAAAAGAAGGAAGAGTTCGTGGAAATTTGATGGGAAAGCGTGTCGATT 164376
Query 432337 TGTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTC 432396
| || || | || |||||||| ||||||| ||| || | || | |||||||| |
Sbjct 164375 TTTCAGCCAGGACGGTTATTACCCCTGATCCCAATCTTCGCATTGATCAGGTTGGTGTGC 164316
Query 432397 C 432397
|
Sbjct 164315 C 164315
>seq14070
Length=708083
Score = 91.5 bits (100), Expect = 1e-12
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 131192 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCC 131251
||||| |||||||| ||| ||||||| ||||| || |||||||||||||||| ||
Sbjct 4176 GCATTCGGTATGGGGATTGATAAACCCGATGTGCGACAAATTATTCATTACGGAGCACCG 4117
Query 131252 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301
|| | || || || ||||||||||| ||| |||| |||||||||||
Sbjct 4116 AAAGACATCGAGTCGTACTATCAAGAAATCGGTCGAGCTGGTCGTGATGG 4067
>seq13938
Length=223151
Score = 91.5 bits (100), Expect = 1e-12
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 131192 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCC 131251
||||| |||||||| ||| ||||||| ||||| || |||||||||||||||| ||
Sbjct 212739 GCATTCGGTATGGGGATTGATAAACCCGATGTGCGACAAATTATTCATTACGGAGCACCG 212680
Query 131252 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301
|| | || || || ||||||||||| ||| |||| |||||||||||
Sbjct 212679 AAAGACATCGAGTCGTACTATCAAGAAATCGGTCGAGCTGGTCGTGATGG 212630
>seq12159
Length=131859
Score = 87.8 bits (96), Expect = 1e-11
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
|||||||||||||| || || ||||||||||| || | || ||| | ||||| | |
Sbjct 68967 TGTACCCTAATTTTAACTGAAGGAGATTCAGCCAAGTCTTTGGCTGTTTCTGGTTTGGGT 68908
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| ||||| |||||| |||| || |||||||| || || || ||| | | || ||| |
Sbjct 68907 GTCATTGGCAGAGATAATTACGGTGTTTTCCCTCTGAGGGGTAAAATGCTCAACGTTCGC 68848
Query 400417 GATGCTAGTCCTaaaaaa 400434
|| |||| | |||| ||
Sbjct 68847 GAAGCTACGCATAAACAA 68830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739906777387014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |