Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq13235 297 1e-74 seq14046 118 8e-21 seq12593 118 8e-21 seq13338 93.3 3e-13 seq14070 91.5 1e-12 seq13938 91.5 1e-12 seq12159 87.8 1e-11 >seq13235 Length=296648 Score = 297 bits (328), Expect = 1e-74 Identities = 609/897 (68%), Gaps = 14/897 (2%) Strand=Plus/Minus Query 281759 ATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTT 281818 || || ||||| | |||||| || || ||||| |||||||| || || | ||| ||| Sbjct 66674 ATCGCGGCTTGCACAGCAGCGCCGTAAGCAACTGCTTCATCTGGGTTGATGCTTTTGTTT 66615 Query 281819 AGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGAT 281878 | || ||| ||||| ||||||| | ||| |||| | | || ||||| || | ||| Sbjct 66614 AATTCTTTGCCATTAAAAAAATCTTGAAGCAGTTTTTGGATTTTGGGAATTCGGGTTGAA 66555 Query 281879 CCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACT 281938 |||||||| | ||||| || || || || | ||||||||| |||| ||| ||| | Sbjct 66554 CCTCCAACAAGAACAATGTCGTGAACTTGAGCTTTATCCAGCTTTGCATCGCGTAAGGCC 66495 Query 281939 TTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 281998 || |||||||| || || | || ||||||||| | | |||||| || ||||| Sbjct 66494 TTCTCAACGGGGTCCAGTGTTGATCGAAACAAGTCGGCGTTCAATTCTTCAAACCTAGCT 66435 Query 281999 CTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAG 282056 | |||| | || | || || || | |||||||| | ||||||| || || | | Sbjct 66434 CGGGTAATCG--ACGTGTAAAAGTCGACGCCTTCGAATAGGGAATCAATCTCGATGCTCG 66377 Query 282057 TTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA 282116 |||||| || |||| | | || |||||||| |||||||| || ||||| | | Sbjct 66376 CTTGAGTACTGGATGATAAGGTCCTCTTCGCACGTTCGCATGCTGTTCTAAGTCTCCTCA 66317 Query 282117 AGGCT--TTTGCT-GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACAC 282173 ||| |||| | || | ||||||| |||| | |||||||||||| |||| ||| Sbjct 66316 CGGCGCGTTTGTTAGA---AGTCAAATCCTTTTTGTGTTTTCTCTTGAACTCTTGTACAA 66260 Query 282174 ACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGT 282231 | ||| | || | || ||||| |||||||| || ||||| | |||| ||| | || Sbjct 66259 A--ATGGTTGACCATTCGGTTATCGAAATCTTCTCCGCCCAAATGGGTATCTCCAGCGGT 66202 Query 282232 AGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACC 282291 | | |||||| |||| || ||||||| | ||||| | ||||| ||| ||||| Sbjct 66201 CGATTTTACTTCAAAAATGCCGTCTTCAATGGTCAAAATCGACACATCGAAGGTACCACC 66142 Query 282292 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGC 282351 |||| ||| ||||| || || || ||| | || || || || || || || Sbjct 66141 GCCCAAATCGAAAATGAGCACGTTTCGCTCTCCACCAACCTTCTTGTCCAGTCCGTAAGC 66082 Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411 || |||||| || || || || || || || | | ||||| | ||||||||| | || Sbjct 66081 AATAGCAGCGGCTGTGGGCTCGTTGATGATGCGAAGCACATTCAAACCAGCAATGGTGCC 66022 Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||||| || |||||||| | ||| ||||||||||| || || || ||||| | || || Sbjct 66021 GGCATCCTTGGTGGCTTGGCGTTGGGAATCGTTAAAGTAAGCTGGGACAGTGACGACTGC 65962 Query 282472 ATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCAT 282531 || |||| ||| || | ||||| || |||| |||||||| |||||| ||| Sbjct 65961 ATTATTTACAGTTTTGCCTAAGTAAGCTTCGGCGGTTTCCTTCATTTTGGTTAAAACCAT 65902 Query 282532 TGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATA 282591 || || |||| ||| || || | ||| ||| || ||| || | | | Sbjct 65901 GGAGGAGATTTCTTCGGGGAAAAAGGTCTTCATTTCGCCTTTGTATTCGACCTTGATTTT 65842 Query 282592 TGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAAC 282648 ||||| ||| | | || || | ||||||||||| |||||| || ||||| || Sbjct 65841 AGGTTTGCCGCCATCGCTGATGACATCAAATGGCCAATGTTTCATGTCAGATTGCAC 65785 >seq14046 Length=357214 Score = 118 bits (130), Expect = 8e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || |||||||| |||| || |||| ||| ||||| ||| |||| ||||| ||||| || Sbjct 10015 GGCTCATTAATGATTCGCATAACAACAAGTCCAGCTATTGTTCCAGCATCCTTAGTTGCC 10074 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||| | |||||||||||| ||||| ||||| | ||| |||| | |||| ||| Sbjct 10075 TGGCGTTGAGCATCGTTAAAATAAGCAGGTACAGTCACAACAGCATGCGACACTTTCTTT 10134 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 || | |||||| || ||| ||||||||| | |||| ||| | ||||||| Sbjct 10135 CCCAAATAAGCTTCGGCAATTTCCTTCATTTTAATCAAAACCATCGCGGAAATTT 10189 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 || ||||||||||| ||||| |||| || || |||||| | ||||| ||| Sbjct 10376 CCGATTAATCGTTTAGCATCGAAAACCGTGTTTTCGGGATTACTAGTCAATTGATTTTTC 10435 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTC---TGTAAATGAAACATATGATGGAGTTGTG 282787 || ||||||||||| ||| ||||| || ||||| | || ||||| ||||| || Sbjct 10436 GCGGCATCTCCAATTAGACGTTCTCCTTCCGGAGTAAAAGCCACGTATGAAGGAGTGATG 10495 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAAC 282819 || || ||||||||||| |||||||| || || Sbjct 10496 CGGTTGCCTTGATCATTGGCAATAATCTCTAC 10527 >seq12593 Length=225266 Score = 118 bits (130), Expect = 8e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 ||||||| ||| || ||||||||||| ||||| |||||| |||| ||||| | ||||| Sbjct 76290 GTCGATTTTTCATCGCCAAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGCTCAACG 76231 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 ||||| ||||| ||||||| | || | || | ||| || ||||| | ||| Sbjct 76230 ATTATCGGTGATAGTATTTGTCGAGTTCTTGAGTTTGTTGGTCATAATGTTACCAGGATT 76171 Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293 ||||| || ||||| ||||| || |||||||| ||| |||||||| || Sbjct 76170 AATCACGTCGGTGACTGGGGCACGCAATTCGGCATGCTAATTGCTCAT 76123 >seq13338 Length=646138 Score = 93.3 bits (102), Expect = 3e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 432277 AAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATA 432336 ||||||||| ||| |||||||| | || | ||||||||||||||||||||||||||| Sbjct 164435 AAAGATTGAAAGGAAAAGAAGGAAGAGTTCGTGGAAATTTGATGGGAAAGCGTGTCGATT 164376 Query 432337 TGTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTC 432396 | || || | || |||||||| ||||||| ||| || | || | |||||||| | Sbjct 164375 TTTCAGCCAGGACGGTTATTACCCCTGATCCCAATCTTCGCATTGATCAGGTTGGTGTGC 164316 Query 432397 C 432397 | Sbjct 164315 C 164315 >seq14070 Length=708083 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 131192 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCC 131251 ||||| |||||||| ||| ||||||| ||||| || |||||||||||||||| || Sbjct 4176 GCATTCGGTATGGGGATTGATAAACCCGATGTGCGACAAATTATTCATTACGGAGCACCG 4117 Query 131252 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 || | || || || ||||||||||| ||| |||| ||||||||||| Sbjct 4116 AAAGACATCGAGTCGTACTATCAAGAAATCGGTCGAGCTGGTCGTGATGG 4067 >seq13938 Length=223151 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 131192 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCC 131251 ||||| |||||||| ||| ||||||| ||||| || |||||||||||||||| || Sbjct 212739 GCATTCGGTATGGGGATTGATAAACCCGATGTGCGACAAATTATTCATTACGGAGCACCG 212680 Query 131252 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 || | || || || ||||||||||| ||| |||| ||||||||||| Sbjct 212679 AAAGACATCGAGTCGTACTATCAAGAAATCGGTCGAGCTGGTCGTGATGG 212630 >seq12159 Length=131859 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 |||||||||||||| || || ||||||||||| || | || ||| | ||||| | | Sbjct 68967 TGTACCCTAATTTTAACTGAAGGAGATTCAGCCAAGTCTTTGGCTGTTTCTGGTTTGGGT 68908 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || ||||| |||||| |||| || |||||||| || || || ||| | | || ||| | Sbjct 68907 GTCATTGGCAGAGATAATTACGGTGTTTTCCCTCTGAGGGGTAAAATGCTCAACGTTCGC 68848 Query 400417 GATGCTAGTCCTaaaaaa 400434 || |||| | |||| || Sbjct 68847 GAAGCTACGCATAAACAA 68830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739906777387014