Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq3790 205 3e-47 seq3891 192 2e-43 >seq3790 Length=1866 Score = 205 bits (226), Expect = 3e-47 Identities = 561/847 (66%), Gaps = 27/847 (3%) Strand=Plus/Minus Query 188747 TAAAGATCAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTAT 188806 || |||| | ||||||||| || | | | || | || ||| ||||||||||||| Sbjct 1646 TAGAGATTCAGAAATCTAATATTTTAATGTTAGGAGCAACCGGTAGTGGTAAAACATTAT 1587 Query 188807 TTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTT 188866 | || ||||| | ||| | || ||| |||| || | || || ||||||| || |||| Sbjct 1586 TAGCAGAAACACTTGCTAAGATCTTAAATGTTCCCTTTGCCATAGCTGATGCTACATCTT 1527 Query 188867 TAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAAC---GTATTGCTTCGTTTAATCC 188923 |||| ||||| || ||||| || |||||||| ||||| ||||| | ||||| Sbjct 1526 TAACTGAAGCCGGATATGTGGGAGAAGATGTAGAAAATATAGTATTAAGGCTTTTAAG-- 1469 Query 188924 AAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAG 188983 |||||| |||| |||| || ||| |||| || ||| | ||||| ||||| | | Sbjct 1468 -AGCAGCAGATTTTAATATTCAAAAAGCAGAACACGGTATTATTTATATTGATGAGATTG 1410 Query 188984 ATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAG 189043 ||||||| |||| |||||||||| || ||||| | ||||| || || || |||| Sbjct 1409 ATAAAATAGCTAAGAAATCAGAAAATGTTTCTATTACTAGGGATGTTTCAGGAGAGGGAG 1350 Query 189044 TACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTG 189103 |||| ||||| | ||||| || ||||||||||| |||| | || || ||||| |||| Sbjct 1349 TACAACAAGCCCTTTTAAAGATTATTGAAGGTACGATTGCTCATGTGCCACCTCAGGGTG 1290 Query 189104 GTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATA-TCTTGTTTATT 189162 || | ||||||||| | || ||| | | || |||| | |||| | || |||||| Sbjct 1289 GTAGAAAACACCCTAATCAGGAATATTTACAGGTAAATACTAAAAATATTTTTATTTATT 1230 Query 189163 CTTGGTGGAGCGTTTGAT--GGTCTTGAAAACATTATCAAGAGACGCGCTACAAAATCAA 189220 ||| || | ||| | || |||| || ||||| | ||| |||||| Sbjct 1229 TGTGGCGGGGGCTTTTTTCAGGAATTGATAAAATTATTACTCAACGATTATTTAAATCAT 1170 Query 189221 CTTTAGGTTTTGATGATAGTGTAGATAAAGTACAAG---AAGAAATCAAGGATGACAATA 189277 | | || |||| || || | | |||| || ||| ||||| ||| |||| | Sbjct 1169 CAATTGGATTTGGTGCTAATATTAATAA--TA-AAGCTAAAGAA--CAA-CATGATA--- 1119 Query 189278 AAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTA 189337 | || ||| | || | ||||| | |||| ||||||||||||| ||| ||| Sbjct 1118 ---TTTTAAAACTTATTTCTGCTGAAGATTTGTTTAAATATGGTTTAATTCAAGAGTTTG 1062 Query 189338 TTGGGCGTGTACCAGTAATCGCAACTCTTAACAAACTTGATCGAGATGC-ATTGATTAAC 189396 | ||| | | || || | | |||| | | | | ||| ||| | || ||| Sbjct 1061 TAGGGAGGCTTCCTGTGGTTGTAACTTTAGATGATATGGATATTGATACTCTTTTATAAA 1002 Query 189397 ATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGAT 189456 ||| | | || || |||| ||||| ||| ||||||| ||||| ||||| |||||| Sbjct 1001 ATTATTAAAGAACCTAAAAATGCTATTATTTCACAATATGCCAAATTATTAGAAATGGAT 942 Query 189457 GGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAA 189516 || | || || || | || || ||| || ||||| || ||| ||||| Sbjct 941 GGAATTAAACTAACTTTTAGTGATGATGCTTTAAAAAGTATTGCTGAGAAAGTTTTTGAA 882 Query 189517 CGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTA-TGTTAGATGTAAT 189575 | || || ||| | |||||| ||| ||| ||||| |||| | | |||||||| Sbjct 881 CAAAAATTAGGAGCTAGAGGATTAAGATCTTATATAGAAAA-ATTATTACTGGATGTAAT 823 Query 189576 GTATGAA 189582 || |||| Sbjct 822 GTTTGAA 816 >seq3891 Length=1033 Score = 192 bits (212), Expect = 2e-43 Identities = 401/591 (68%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 55196 AGTAAACTACTATTCTATTGAGAAAAGTATGATGATCGCTAAAGAAACTGGGGTTAAGTT 55255 |||||| || |||||| | | |||||| || |||||||||||| || || Sbjct 1 AGTAAATTATTATTCTCTAAAACGGAGTATGGAAATTGCTAAAGAAACTAAAAGTATCTT 60 Query 55256 TAAAGACTTTGAAAGATCAGAATATGCAAAAGGTACTTATTTTGCTAAATATCTTAAAAA 55315 || || ||||| | ||| || ||| ||| |||| ||||||| | |||| | || | Sbjct 61 TAGAGGTTTTGAGAAATCTGAGTATAAAAACGGTAATTATTTTAAGATATATTTAGAAGA 120 Query 55316 CGATTACTCTCCTAGAACTGAAAAAATCAAACAAATGTTTGATGGAATTGAAATTCCTTC 55375 |||| ||||||| |||| || |||| || | || |||| || || |||||| Sbjct 121 AGATTTTTCTCCTAAAACTCAAGAAATTCAAGAGATTTTTGCCGGTATGTTTATTCCTAG 180 Query 55376 --TCAATCAGATTGGGAGAATTTAATGTTTGATGTTAAGAAATATGGTTTATACCATGCT 55433 | || |||||| | | ||| | | || | || |||| | || |||||| Sbjct 181 CTTGGAT--GATTGGAACGAGCTAAAGACAGCAGTGCAAGAACATGGGCTTTATCATGCT 238 Query 55434 TACCGTCTGGCAACAGCACCAACACAAAGTATTTCTTATATTCAAAATGCAACGCCAAGT 55493 || | || | | || ||||| || || ||||||||||| |||||| | || | Sbjct 239 TATAGGCTCTCTATTGCTCCAACTCAGAGCATTTCTTATATACAAAATTCTACTTCTTCA 298 Query 55494 GTTATGCCAATTGTAGATCATATTGAAGCTAGAACATATGCTAACTCTACAACATACTAT 55553 ||||||| |||||||| | ||| ||||||| || | |||||||| |||| ||| Sbjct 299 ATTATGCCGGTTGTAGATGTGGTAGAAACTAGAACTTACGGAAACTCTACTTCATATTAT 358 Query 55554 CCAATGCCTTATTT--GTCATTAGATACTTTCTGGTATTATAAATCAGCATATAATACAA 55611 |||||||||||||| |||| ||||| | ||| | |||||||| |||||||||| Sbjct 359 CCAATGCCTTATTTAAGTCA--AGATAATATCTTTTTATATAAATCTGCATATAATATGG 416 Query 55612 ATCAATTTAAATTAATTGACATTATTGCTGAAATGCAAGAACATGTAGACCAAGGTATTA 55671 || |||| |||| || | | || | || ||| |||||||||||||| |||| Sbjct 417 ATATGACTAAACTAATAGATTTAGTGGCAAATATTCAAAGGCATGTAGACCAAGGGATTA 476 Query 55672 GTACAATTTTATATGTAAATAGCGATATTACCACTAGCGAATTAGCTAGATATTATATTT 55731 |||| ||||||||||| | || | | | || || | || |||| | | ||| ||| Sbjct 477 GTACTATTTTATATGTTACTAACCAAACCACAACCAAAGAGTTAGTTCGTCTGTATCTTT 536 Query 55732 ATGCAAGTGAAAAAGGATTAAAGAGTCTT-TACTACACTAGAACGAATAAT 55781 |||| | | ||||| ||||| || || || || |||||||| || ||| Sbjct 537 ATGCTCATCATAAAGGCTTAAA-AGCATTATATTATACTAGAACTAAAAAT 586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591609778167872