Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq3790 205 3e-47
seq3891 192 2e-43
>seq3790
Length=1866
Score = 205 bits (226), Expect = 3e-47
Identities = 561/847 (66%), Gaps = 27/847 (3%)
Strand=Plus/Minus
Query 188747 TAAAGATCAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTAT 188806
|| |||| | ||||||||| || | | | || | || ||| |||||||||||||
Sbjct 1646 TAGAGATTCAGAAATCTAATATTTTAATGTTAGGAGCAACCGGTAGTGGTAAAACATTAT 1587
Query 188807 TTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTT 188866
| || ||||| | ||| | || ||| |||| || | || || ||||||| || ||||
Sbjct 1586 TAGCAGAAACACTTGCTAAGATCTTAAATGTTCCCTTTGCCATAGCTGATGCTACATCTT 1527
Query 188867 TAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAAC---GTATTGCTTCGTTTAATCC 188923
|||| ||||| || ||||| || |||||||| ||||| ||||| | |||||
Sbjct 1526 TAACTGAAGCCGGATATGTGGGAGAAGATGTAGAAAATATAGTATTAAGGCTTTTAAG-- 1469
Query 188924 AAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAG 188983
|||||| |||| |||| || ||| |||| || ||| | ||||| ||||| | |
Sbjct 1468 -AGCAGCAGATTTTAATATTCAAAAAGCAGAACACGGTATTATTTATATTGATGAGATTG 1410
Query 188984 ATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAG 189043
||||||| |||| |||||||||| || ||||| | ||||| || || || ||||
Sbjct 1409 ATAAAATAGCTAAGAAATCAGAAAATGTTTCTATTACTAGGGATGTTTCAGGAGAGGGAG 1350
Query 189044 TACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTG 189103
|||| ||||| | ||||| || ||||||||||| |||| | || || ||||| ||||
Sbjct 1349 TACAACAAGCCCTTTTAAAGATTATTGAAGGTACGATTGCTCATGTGCCACCTCAGGGTG 1290
Query 189104 GTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATA-TCTTGTTTATT 189162
|| | ||||||||| | || ||| | | || |||| | |||| | || ||||||
Sbjct 1289 GTAGAAAACACCCTAATCAGGAATATTTACAGGTAAATACTAAAAATATTTTTATTTATT 1230
Query 189163 CTTGGTGGAGCGTTTGAT--GGTCTTGAAAACATTATCAAGAGACGCGCTACAAAATCAA 189220
||| || | ||| | || |||| || ||||| | ||| ||||||
Sbjct 1229 TGTGGCGGGGGCTTTTTTCAGGAATTGATAAAATTATTACTCAACGATTATTTAAATCAT 1170
Query 189221 CTTTAGGTTTTGATGATAGTGTAGATAAAGTACAAG---AAGAAATCAAGGATGACAATA 189277
| | || |||| || || | | |||| || ||| ||||| ||| |||| |
Sbjct 1169 CAATTGGATTTGGTGCTAATATTAATAA--TA-AAGCTAAAGAA--CAA-CATGATA--- 1119
Query 189278 AAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTA 189337
| || ||| | || | ||||| | |||| ||||||||||||| ||| |||
Sbjct 1118 ---TTTTAAAACTTATTTCTGCTGAAGATTTGTTTAAATATGGTTTAATTCAAGAGTTTG 1062
Query 189338 TTGGGCGTGTACCAGTAATCGCAACTCTTAACAAACTTGATCGAGATGC-ATTGATTAAC 189396
| ||| | | || || | | |||| | | | | ||| ||| | || |||
Sbjct 1061 TAGGGAGGCTTCCTGTGGTTGTAACTTTAGATGATATGGATATTGATACTCTTTTATAAA 1002
Query 189397 ATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGAT 189456
||| | | || || |||| ||||| ||| ||||||| ||||| ||||| ||||||
Sbjct 1001 ATTATTAAAGAACCTAAAAATGCTATTATTTCACAATATGCCAAATTATTAGAAATGGAT 942
Query 189457 GGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAA 189516
|| | || || || | || || ||| || ||||| || ||| |||||
Sbjct 941 GGAATTAAACTAACTTTTAGTGATGATGCTTTAAAAAGTATTGCTGAGAAAGTTTTTGAA 882
Query 189517 CGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTA-TGTTAGATGTAAT 189575
| || || ||| | |||||| ||| ||| ||||| |||| | | ||||||||
Sbjct 881 CAAAAATTAGGAGCTAGAGGATTAAGATCTTATATAGAAAA-ATTATTACTGGATGTAAT 823
Query 189576 GTATGAA 189582
|| ||||
Sbjct 822 GTTTGAA 816
>seq3891
Length=1033
Score = 192 bits (212), Expect = 2e-43
Identities = 401/591 (68%), Gaps = 10/591 (2%)
Strand=Plus/Plus
Query 55196 AGTAAACTACTATTCTATTGAGAAAAGTATGATGATCGCTAAAGAAACTGGGGTTAAGTT 55255
|||||| || |||||| | | |||||| || |||||||||||| || ||
Sbjct 1 AGTAAATTATTATTCTCTAAAACGGAGTATGGAAATTGCTAAAGAAACTAAAAGTATCTT 60
Query 55256 TAAAGACTTTGAAAGATCAGAATATGCAAAAGGTACTTATTTTGCTAAATATCTTAAAAA 55315
|| || ||||| | ||| || ||| ||| |||| ||||||| | |||| | || |
Sbjct 61 TAGAGGTTTTGAGAAATCTGAGTATAAAAACGGTAATTATTTTAAGATATATTTAGAAGA 120
Query 55316 CGATTACTCTCCTAGAACTGAAAAAATCAAACAAATGTTTGATGGAATTGAAATTCCTTC 55375
|||| ||||||| |||| || |||| || | || |||| || || ||||||
Sbjct 121 AGATTTTTCTCCTAAAACTCAAGAAATTCAAGAGATTTTTGCCGGTATGTTTATTCCTAG 180
Query 55376 --TCAATCAGATTGGGAGAATTTAATGTTTGATGTTAAGAAATATGGTTTATACCATGCT 55433
| || |||||| | | ||| | | || | || |||| | || ||||||
Sbjct 181 CTTGGAT--GATTGGAACGAGCTAAAGACAGCAGTGCAAGAACATGGGCTTTATCATGCT 238
Query 55434 TACCGTCTGGCAACAGCACCAACACAAAGTATTTCTTATATTCAAAATGCAACGCCAAGT 55493
|| | || | | || ||||| || || ||||||||||| |||||| | || |
Sbjct 239 TATAGGCTCTCTATTGCTCCAACTCAGAGCATTTCTTATATACAAAATTCTACTTCTTCA 298
Query 55494 GTTATGCCAATTGTAGATCATATTGAAGCTAGAACATATGCTAACTCTACAACATACTAT 55553
||||||| |||||||| | ||| ||||||| || | |||||||| |||| |||
Sbjct 299 ATTATGCCGGTTGTAGATGTGGTAGAAACTAGAACTTACGGAAACTCTACTTCATATTAT 358
Query 55554 CCAATGCCTTATTT--GTCATTAGATACTTTCTGGTATTATAAATCAGCATATAATACAA 55611
|||||||||||||| |||| ||||| | ||| | |||||||| ||||||||||
Sbjct 359 CCAATGCCTTATTTAAGTCA--AGATAATATCTTTTTATATAAATCTGCATATAATATGG 416
Query 55612 ATCAATTTAAATTAATTGACATTATTGCTGAAATGCAAGAACATGTAGACCAAGGTATTA 55671
|| |||| |||| || | | || | || ||| |||||||||||||| ||||
Sbjct 417 ATATGACTAAACTAATAGATTTAGTGGCAAATATTCAAAGGCATGTAGACCAAGGGATTA 476
Query 55672 GTACAATTTTATATGTAAATAGCGATATTACCACTAGCGAATTAGCTAGATATTATATTT 55731
|||| ||||||||||| | || | | | || || | || |||| | | ||| |||
Sbjct 477 GTACTATTTTATATGTTACTAACCAAACCACAACCAAAGAGTTAGTTCGTCTGTATCTTT 536
Query 55732 ATGCAAGTGAAAAAGGATTAAAGAGTCTT-TACTACACTAGAACGAATAAT 55781
|||| | | ||||| ||||| || || || || |||||||| || |||
Sbjct 537 ATGCTCATCATAAAGGCTTAAA-AGCATTATATTATACTAGAACTAAAAAT 586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591609778167872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |