Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq13338 196 9e-45 seq12471 179 7e-40 seq13894 154 3e-32 seq7061 125 1e-23 seq12177 91.5 3e-13 seq13384 84.2 4e-11 >seq13338 Length=646138 Score = 196 bits (216), Expect = 9e-45 Identities = 246/338 (73%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 143949 GATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTT 144008 || |||||||| ||| || ||||||| || || ||||| | ||||| ||||| Sbjct 624890 GACAAAGATGAATGGGACACCTGGAAAACTATGAAAGACCCAGTGCTACATATTGAACTA 624949 Query 144009 AGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATA 144068 | |||||||||||| | ||| |||| || || ||| || ||||||||||| ||||| Sbjct 624950 CGTAGATGGGCTGATTTATTTGTTATTGCTCCGTTAGATGCTAATACGTTAGCCAAAATG 625009 Query 144069 GCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAA 144128 || ||||| || || ||||||||| | || | | ||| |||||| ||||| || ||| Sbjct 625010 GCTAATGGAATGTGTGATAATTTAATTACTTGTGTAGCAAGAGCTTGGGACCCTAAAAAA 625069 Query 144129 CCTCTTATTTTTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACAGAAAAA 144188 |||||| |||| ||||| || |||||||| |||||||||||||||| | |||| | Sbjct 625070 CCTCTTCTTTTCTGCCCTGCCATGAATACATTTATGTGGGAACATCCATTAACAGCAGTT 625129 Query 144189 CATATAGATACTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaCTA 144248 ||||| || | | | ||| | | |||| |||| ||| | | | |||||| |||| Sbjct 625130 CATATTGACAATATGAAAAAATTAGGTTATGTAGAGATACCAGTTGTTAAAAAAACACTA 625189 Query 144249 GCCTGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGT 144286 || ||||| || ||| ||||||| ||||| || || Sbjct 625190 GCATGTGGTGATACAGGTTATGGTGCAATGGCTGAGGT 625227 >seq12471 Length=105862 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| || ||||| || |||||||| ||||| || || || || ||||| Sbjct 72595 TACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGC 72654 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||| ||||| | |||||||||||| || || | | |||||||| |||| Sbjct 72655 TCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 72714 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||| ||||| ||||| |||||||| ||||| ||| ||||||| | Sbjct 72715 GGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAA 72774 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || |||||||| ||||| ||||| || || || ||||| Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||| || || || || ||||||||||| || || ||||| || | | ||| ||||| Sbjct 72903 AACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTC 72962 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 |||||||| |||||||||||||| | ||||||||||| || || ||||| || ||||| Sbjct 72963 GAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTG 73022 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 ||||| ||||| |||||||| || || ||| |||| || |||||||| || || ||||| Sbjct 73023 GATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTT 73082 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| |||| || || || || || ||||| Sbjct 73083 GCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| || || ||||||||||| || || || || Sbjct 72367 TACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGC 72426 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | | || || || | ||||| || ||||| || || | |||||||| || | Sbjct 72427 TTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTG 72486 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || ||||||||||| || ||||| || | || || | Sbjct 72487 GGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAA 72546 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| || || | || || ||||| |||||||| Sbjct 72547 CTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| ||||| ||||||||||| || || || || | | | | ||| Sbjct 73416 CGGAGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCA 73475 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| || || ||||| | | |||||||||||||| || ||||| || Sbjct 73476 TCTTCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTG 73535 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| ||||| ||||| ||||| |||||| | || || |||||||| || || Sbjct 73536 TCTTGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATG 73595 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | || || || || ||||||||| Sbjct 73596 GTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| ||| | || || || |||| || ||||||||||| || || || || Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || |||||||| || || | || |||||||| ||||| Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||| |||||||| || || || || || ||||| || | || || || Sbjct 73752 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACC 73811 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 |||||||| || || || || || | || || ||||| |||||||| ||| || Sbjct 73812 TCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATTCTA 73865 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| || || ||||||||||| || || ||||| Sbjct 73112 TACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGC 73171 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || ||||| | |||||||||||| || || | | |||||||| |||| Sbjct 73172 TGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 73231 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||||||||| ||||||||||| || || || || | || || | Sbjct 73232 GAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAA 73291 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || || || || | || || ||||| |||||||| Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || ||| ||||| || || || || || || || || ||||| | | | ||| || Sbjct 72155 CAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATC 72214 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || |||||||| ||||||||||| | || ||||| || || || ||||| || || || Sbjct 72215 CTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTC 72274 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||| ||||| || || ||||||||||| || ||| | || || |||||||| || || || Sbjct 72275 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGT 72334 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| |||| || || ||||| |||||||| Sbjct 72335 CTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 >seq13894 Length=1211295 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| ||||||| || | || || || ||||| ||||| || || || || | Sbjct 232173 TACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGG 232232 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||| || ||||| | ||| || || ||||| |||| || ||| ||||| || | Sbjct 232233 ATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTG 232292 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| || || || || || || |||||||||||||| ||| || | Sbjct 232293 GGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGA 232352 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| | |||||| ||||| || || || || || ||||| ||||||||| Sbjct 232353 CTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATT 232402 Score = 147 bits (162), Expect = 4e-30 Identities = 172/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATT-CTTTCTGTATATTATAATCA 82640 |||| |||||||||||||| || | || || || |||| ||||||| || || ||||| Sbjct 231716 TACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCT 231775 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || | ||| || ||||| |||||||| || |||||||| | | || ||||| ||| Sbjct 231776 GACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGA 231835 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || ||||| || ||||| || || || || || ||||| || ||||| |||||| Sbjct 231836 GGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCG 231895 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| | || || ||||| || || || || || || || ||||||||| Sbjct 231896 ACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||||||||| || | || || || || |||||||| || || ||||| || Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | ||| ||||| || ||||| | || ||| |||||||| || Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| || || || || || |||||||| || || ||||| ||| Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || || || || || ||||| |||||||| Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 >seq7061 Length=6671 Score = 125 bits (138), Expect = 1e-23 Identities = 161/221 (73%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || | ||| ||||||||||||||| ||||| ||| | | | |||||| Sbjct 2971 ACTAAATGTAAAGTGTTTTCTTTCTGTATATTGTAATCTTCGAGACGTTTTTCATCTTCT 2912 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||| ||||||||||||| |||||| || || || | ||||||||| ||||||||| Sbjct 2911 AACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGA 2852 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||| |||| | || || || ||||| | | || || | ||||| | || Sbjct 2851 ATCTTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAATCTATCGTTATGGATTTC 2792 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTA-TTATATTTT 82821 || || || || || ||||| ||||||| | |||| |||| Sbjct 2791 CCCGTTAAAGTTTTAACAAAGATCTGCAAGATTTATCTTTT 2751 >seq12177 Length=61224 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || |||||||| || ||||| |||||||| || ||||| ||||| |||||| Sbjct 22486 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCCGACGGTTCAACTTCC 22427 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 ||||| || || || || || | ||||| || || ||||||||||| || Sbjct 22426 AAAGTAATGGTTTTACCCGTAAGTGTCTTGACGAAGATCTGCATTATAAT 22377 >seq13384 Length=139451 Score = 84.2 bits (92), Expect = 4e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA-TATTATAATCAG 82641 ||| |||||||| | | |||||| || | || || | | || | | ||| ||||| || Sbjct 40846 ACCGCCTCTCAATCTTAAAACTAAATGAATCGTTGACT-TGTCAGAAATATGATAATGAG 40904 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | |||| |||| || |||||| |||| | ||||| ||||||||| || | Sbjct 40905 CCAATGTTAAATCGTCCTCTAACTGCTTTCCACCAAAAACTAGTCGTTGTTGATCAGGTG 40964 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 |||||||||| || ||||||| || ||| || | |||||| || ||| Sbjct 40965 GTATTCCTTCTTTTTCTTGAACTTTAAATTTCACGTCTTCAATTGTTTCA 41014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981641788376521