Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 196 9e-45
seq12471 179 7e-40
seq13894 154 3e-32
seq7061 125 1e-23
seq12177 91.5 3e-13
seq13384 84.2 4e-11
>seq13338
Length=646138
Score = 196 bits (216), Expect = 9e-45
Identities = 246/338 (73%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 143949 GATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTT 144008
|| |||||||| ||| || ||||||| || || ||||| | ||||| |||||
Sbjct 624890 GACAAAGATGAATGGGACACCTGGAAAACTATGAAAGACCCAGTGCTACATATTGAACTA 624949
Query 144009 AGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATA 144068
| |||||||||||| | ||| |||| || || ||| || ||||||||||| |||||
Sbjct 624950 CGTAGATGGGCTGATTTATTTGTTATTGCTCCGTTAGATGCTAATACGTTAGCCAAAATG 625009
Query 144069 GCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAA 144128
|| ||||| || || ||||||||| | || | | ||| |||||| ||||| || |||
Sbjct 625010 GCTAATGGAATGTGTGATAATTTAATTACTTGTGTAGCAAGAGCTTGGGACCCTAAAAAA 625069
Query 144129 CCTCTTATTTTTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACAGAAAAA 144188
|||||| |||| ||||| || |||||||| |||||||||||||||| | |||| |
Sbjct 625070 CCTCTTCTTTTCTGCCCTGCCATGAATACATTTATGTGGGAACATCCATTAACAGCAGTT 625129
Query 144189 CATATAGATACTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaCTA 144248
||||| || | | | ||| | | |||| |||| ||| | | | |||||| ||||
Sbjct 625130 CATATTGACAATATGAAAAAATTAGGTTATGTAGAGATACCAGTTGTTAAAAAAACACTA 625189
Query 144249 GCCTGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGT 144286
|| ||||| || ||| ||||||| ||||| || ||
Sbjct 625190 GCATGTGGTGATACAGGTTATGGTGCAATGGCTGAGGT 625227
>seq12471
Length=105862
Score = 179 bits (198), Expect = 7e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||||||| || ||||| || |||||||| ||||| || || || || |||||
Sbjct 72595 TACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGC 72654
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | ||| ||||| | |||||||||||| || || | | |||||||| ||||
Sbjct 72655 TCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 72714
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || || |||||||| ||||| ||||| |||||||| ||||| ||| ||||||| |
Sbjct 72715 GGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAA 72774
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || ||||| || |||||||| ||||| ||||| || || || |||||
Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660
||| || || || || ||||||||||| || || ||||| || | | ||| |||||
Sbjct 72903 AACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTC 72962
Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720
|||||||| |||||||||||||| | ||||||||||| || || ||||| || |||||
Sbjct 72963 GAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTG 73022
Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780
||||| ||||| |||||||| || || ||| |||| || |||||||| || || |||||
Sbjct 73023 GATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTT 73082
Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| |||| || || || || || |||||
Sbjct 73083 GCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 152 bits (168), Expect = 1e-31
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||||||| | || || ||||| || || ||||||||||| || || || ||
Sbjct 72367 TACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGC 72426
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | | || || || | ||||| || ||||| || || | |||||||| || |
Sbjct 72427 TTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTG 72486
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||||||||| || ||||||||||| || ||||| || | || || |
Sbjct 72487 GGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAA 72546
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||| || ||||| || || | || || ||||| ||||||||
Sbjct 72547 CTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 147 bits (162), Expect = 4e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||| ||||| ||||||||||| || || || || | | | | |||
Sbjct 73416 CGGAGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCA 73475
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | |||||| || || ||||| | | |||||||||||||| || ||||| ||
Sbjct 73476 TCTTCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTG 73535
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| ||||| ||||| ||||| ||||| |||||| | || || |||||||| || ||
Sbjct 73536 TCTTGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATG 73595
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| || || || | || || || || |||||||||
Sbjct 73596 GTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
Score = 147 bits (162), Expect = 4e-30
Identities = 173/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||||| ||| | || || || |||| || ||||||||||| || || || ||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | |||||||| || || |||||||| || || | || |||||||| |||||
Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|||||||||||||| |||||||| || || || || || ||||| || | || || ||
Sbjct 73752 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACC 73811
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817
|||||||| || || || || || | || || ||||| |||||||| ||| ||
Sbjct 73812 TCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATTCTA 73865
Score = 143 bits (158), Expect = 5e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||||||| | || || ||||| || || ||||||||||| || || |||||
Sbjct 73112 TACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGC 73171
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | || ||||| | |||||||||||| || || | | |||||||| ||||
Sbjct 73172 TGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 73231
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || ||||||||||| ||||||||||| || || || || | || || |
Sbjct 73232 GAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAA 73291
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | || || || || || || | || || ||||| ||||||||
Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657
|| ||| ||||| || || || || || || || || ||||| | | | ||| ||
Sbjct 72155 CAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATC 72214
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
|| |||||||| ||||||||||| | || ||||| || || || ||||| || || ||
Sbjct 72215 CTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTC 72274
Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777
||| ||||| || || ||||||||||| || ||| | || || |||||||| || || ||
Sbjct 72275 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGT 72334
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| |||| || || ||||| ||||||||
Sbjct 72335 CTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
>seq13894
Length=1211295
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| ||||||| || | || || || ||||| ||||| || || || || |
Sbjct 232173 TACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGG 232232
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| ||| || ||||| | ||| || || ||||| |||| || ||| ||||| || |
Sbjct 232233 ATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTG 232292
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| ||||| || || || || || || |||||||||||||| ||| || |
Sbjct 232293 GGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGA 232352
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| | |||||| ||||| || || || || || ||||| |||||||||
Sbjct 232353 CTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATT 232402
Score = 147 bits (162), Expect = 4e-30
Identities = 172/231 (74%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATT-CTTTCTGTATATTATAATCA 82640
|||| |||||||||||||| || | || || || |||| ||||||| || || |||||
Sbjct 231716 TACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCT 231775
Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700
|| | ||| || ||||| |||||||| || |||||||| | | || ||||| |||
Sbjct 231776 GACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGA 231835
Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760
|| || ||||| || ||||| || || || || || ||||| || ||||| ||||||
Sbjct 231836 GGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCG 231895
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| | || || ||||| || || || || || || || |||||||||
Sbjct 231896 ACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||||||||||||| || | || || || || |||||||| || || ||||| ||
Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | || ||||| | ||| ||||| || ||||| | || ||| |||||||| ||
Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || || || ||||| || || || || || |||||||| || || ||||| |||
Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || || || || || || || ||||| ||||||||
Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
>seq7061
Length=6671
Score = 125 bits (138), Expect = 1e-23
Identities = 161/221 (73%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
||||| || | ||| ||||||||||||||| ||||| ||| | | | ||||||
Sbjct 2971 ACTAAATGTAAAGTGTTTTCTTTCTGTATATTGTAATCTTCGAGACGTTTTTCATCTTCT 2912
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
| ||||| ||||||||||||| |||||| || || || | ||||||||| |||||||||
Sbjct 2911 AACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTTATCTTGA 2852
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
|||||| |||| | || || || ||||| | | || || | ||||| | ||
Sbjct 2851 ATCTTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAATCTATCGTTATGGATTTC 2792
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTA-TTATATTTT 82821
|| || || || || ||||| ||||||| | |||| ||||
Sbjct 2791 CCCGTTAAAGTTTTAACAAAGATCTGCAAGATTTATCTTTT 2751
>seq12177
Length=61224
Score = 91.5 bits (100), Expect = 3e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
||||| || |||||||| || ||||| |||||||| || ||||| ||||| ||||||
Sbjct 22486 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCCGACGGTTCAACTTCC 22427
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816
||||| || || || || || | ||||| || || ||||||||||| ||
Sbjct 22426 AAAGTAATGGTTTTACCCGTAAGTGTCTTGACGAAGATCTGCATTATAAT 22377
>seq13384
Length=139451
Score = 84.2 bits (92), Expect = 4e-11
Identities = 122/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA-TATTATAATCAG 82641
||| |||||||| | | |||||| || | || || | | || | | ||| ||||| ||
Sbjct 40846 ACCGCCTCTCAATCTTAAAACTAAATGAATCGTTGACT-TGTCAGAAATATGATAATGAG 40904
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | |||| |||| || |||||| |||| | ||||| ||||||||| || |
Sbjct 40905 CCAATGTTAAATCGTCCTCTAACTGCTTTCCACCAAAAACTAGTCGTTGTTGATCAGGTG 40964
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751
|||||||||| || ||||||| || ||| || | |||||| || |||
Sbjct 40965 GTATTCCTTCTTTTTCTTGAACTTTAAATTTCACGTCTTCAATTGTTTCA 41014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981641788376521
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