Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq13912 104 3e-17 seq14290 98.7 1e-15 seq14070 98.7 1e-15 seq13641 98.7 1e-15 seq7566 98.7 1e-15 seq4438 98.7 1e-15 seq4332 98.7 1e-15 seq13653 89.7 7e-13 >seq13912 Length=681751 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 ||||||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||| Sbjct 391990 TATTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 391931 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 391930 TTCCCCGTCGGGGAG 391916 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||| Sbjct 391915 ACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 391974 Query 139412 ATACTAACGAGGA 139424 |||||| |||||| Sbjct 391975 ATACTATCGAGGA 391987 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 391987 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 391928 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 391927 CCCGTCGGGGAG 391916 >seq14290 Length=91518 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 30663 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 30604 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 30603 CCCGTCGGGGAG 30592 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 30665 AGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 30606 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 30605 TCCCCGTCGGGGAGG 30591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 30592 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 30651 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 30652 TACTATCGAGGACTT 30666 >seq14070 Length=708083 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 296583 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 296642 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 296643 CCCGTCGGGGAG 296654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 296654 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 296595 Query 139413 TACTAACGAGGATTT 139427 ||||| ||||||||| Sbjct 296594 TACTATCGAGGATTT 296580 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 296583 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 296642 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 296643 CCCGTCGGGGAG 296654 >seq13641 Length=1019812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 583682 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 583741 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 583742 CCCGTCGGGGAG 583753 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 584722 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 584663 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 584662 CCCGTCGGGGAG 584651 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 583681 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 583740 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 583741 CCCCGTCGGGGAG 583753 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 584723 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 584664 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 584663 CCCCGTCGGGGAG 584651 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||| Sbjct 584650 ACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 584709 Query 139412 ATACTAACGAGGA 139424 |||||| |||||| Sbjct 584710 ATACTATCGAGGA 584722 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 583753 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 583694 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 583693 TACTATCGAGGA 583682 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 599265 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 599206 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 599205 CCTGTCGGGGAG 599194 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || | |||| |||||||| ||||||||| | |||| |||||||| ||||||||| Sbjct 599194 CTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 599253 Query 139413 TACTAACGAGGAT 139425 ||||| ||||||| Sbjct 599254 TACTATCGAGGAT 599266 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 599265 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 599206 Query 11789 CCCGACGAGGAG 11800 || | || |||| Sbjct 599205 CCTGTCGGGGAG 599194 >seq7566 Length=248414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||| | |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 99472 TAAACAAGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 99413 Query 11781 TTCGATTCCCCGACGAGGAGG 11801 |||||||||||| || ||||| Sbjct 99412 TTCGATTCCCCGTCGGGGAGG 99392 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 99464 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 99405 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 99404 CCCGTCGGGGAG 99393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 99393 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 99452 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 99453 TACTATCGAGGACTT 99467 >seq4438 Length=69196 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 12629 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 12570 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 12569 CCCGTCGGGGAG 12558 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 12631 AGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 12572 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 12571 TCCCCGTCGGGGAGG 12557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 12558 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 12617 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 12618 TACTATCGAGGACTT 12632 >seq4332 Length=215406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 174262 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 174321 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 174322 CCCGTCGGGGAG 174333 Score = 96.9 bits (106), Expect = 5e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 |||| | ||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 174254 TAACACGGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 174313 Query 11781 TTCGATTCCCCGACGAGGAG 11800 |||||||||||| || |||| Sbjct 174314 TTCGATTCCCCGTCGGGGAG 174333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 174582 TAGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 174641 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 174642 TTCCCCGTCGGGGAG 174656 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 174866 TAGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 174925 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 174926 TTCCCCGTCGGGGAG 174940 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 174333 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 174274 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 174273 TACTATCGAGGA 174262 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 174583 AGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 174642 Query 11787 TCCCCGACGAGGAG 11800 |||||| || |||| Sbjct 174643 TCCCCGTCGGGGAG 174656 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 174867 AGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 174926 Query 11787 TCCCCGACGAGGAG 11800 |||||| || |||| Sbjct 174927 TCCCCGTCGGGGAG 174940 >seq13653 Length=227863 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 167591 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 167532 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 167531 CCTGTCGGGGAG 167520 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 167591 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 167532 Query 11789 CCCGACGAGGAGG 11801 || | || ||||| Sbjct 167531 CCTGTCGGGGAGG 167519 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || | |||| |||||||| ||||||||| | |||| |||||||| ||||||||| Sbjct 167520 CTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 167579 Query 139413 TACTAACGAGGAT 139425 ||||| ||||||| Sbjct 167580 TACTATCGAGGAT 167592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652724521506160