Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq13912 104 3e-17
seq14290 98.7 1e-15
seq14070 98.7 1e-15
seq13641 98.7 1e-15
seq7566 98.7 1e-15
seq4438 98.7 1e-15
seq4332 98.7 1e-15
seq13653 89.7 7e-13
>seq13912
Length=681751
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
||||||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||
Sbjct 391990 TATTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 391931
Query 8715 TTCCCCGACGAGGAG 8729
||||||| || ||||
Sbjct 391930 TTCCCCGTCGGGGAG 391916
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411
||||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||
Sbjct 391915 ACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 391974
Query 139412 ATACTAACGAGGA 139424
|||||| ||||||
Sbjct 391975 ATACTATCGAGGA 391987
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/72 (89%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 391987 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 391928
Query 11789 CCCGACGAGGAG 11800
|||| || ||||
Sbjct 391927 CCCGTCGGGGAG 391916
>seq14290
Length=91518
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 30663 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 30604
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 30603 CCCGTCGGGGAG 30592
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 30665 AGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 30606
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 30605 TCCCCGTCGGGGAGG 30591
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 30592 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 30651
Query 139413 TACTAACGAGGATTT 139427
||||| |||||| ||
Sbjct 30652 TACTATCGAGGACTT 30666
>seq14070
Length=708083
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 296583 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 296642
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 296643 CCCGTCGGGGAG 296654
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 296654 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 296595
Query 139413 TACTAACGAGGATTT 139427
||||| |||||||||
Sbjct 296594 TACTATCGAGGATTT 296580
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/72 (89%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 296583 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 296642
Query 11789 CCCGACGAGGAG 11800
|||| || ||||
Sbjct 296643 CCCGTCGGGGAG 296654
>seq13641
Length=1019812
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 583682 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 583741
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 583742 CCCGTCGGGGAG 583753
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 584722 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 584663
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 584662 CCCGTCGGGGAG 584651
Score = 93.3 bits (102), Expect = 6e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 583681 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 583740
Query 11788 CCCCGACGAGGAG 11800
||||| || ||||
Sbjct 583741 CCCCGTCGGGGAG 583753
Score = 93.3 bits (102), Expect = 6e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 584723 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 584664
Query 11788 CCCCGACGAGGAG 11800
||||| || ||||
Sbjct 584663 CCCCGTCGGGGAG 584651
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411
||||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||
Sbjct 584650 ACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 584709
Query 139412 ATACTAACGAGGA 139424
|||||| ||||||
Sbjct 584710 ATACTATCGAGGA 584722
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 583753 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 583694
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 583693 TACTATCGAGGA 583682
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | ||||||||| |||||||||||
Sbjct 599265 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 599206
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 599205 CCTGTCGGGGAG 599194
Score = 82.4 bits (90), Expect = 1e-10
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || | |||| |||||||| ||||||||| | |||| |||||||| |||||||||
Sbjct 599194 CTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 599253
Query 139413 TACTAACGAGGAT 139425
||||| |||||||
Sbjct 599254 TACTATCGAGGAT 599266
Score = 82.4 bits (90), Expect = 1e-10
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||| |||||||||||| ||||| |||| ||||| | ||||||||| |||||||||||
Sbjct 599265 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 599206
Query 11789 CCCGACGAGGAG 11800
|| | || ||||
Sbjct 599205 CCTGTCGGGGAG 599194
>seq7566
Length=248414
Score = 98.7 bits (108), Expect = 1e-15
Identities = 71/81 (88%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780
||| | |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||
Sbjct 99472 TAAACAAGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 99413
Query 11781 TTCGATTCCCCGACGAGGAGG 11801
|||||||||||| || |||||
Sbjct 99412 TTCGATTCCCCGTCGGGGAGG 99392
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 99464 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 99405
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 99404 CCCGTCGGGGAG 99393
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 99393 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 99452
Query 139413 TACTAACGAGGATTT 139427
||||| |||||| ||
Sbjct 99453 TACTATCGAGGACTT 99467
>seq4438
Length=69196
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 12629 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 12570
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 12569 CCCGTCGGGGAG 12558
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 12631 AGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 12572
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 12571 TCCCCGTCGGGGAGG 12557
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 12558 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 12617
Query 139413 TACTAACGAGGATTT 139427
||||| |||||| ||
Sbjct 12618 TACTATCGAGGACTT 12632
>seq4332
Length=215406
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 174262 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 174321
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 174322 CCCGTCGGGGAG 174333
Score = 96.9 bits (106), Expect = 5e-15
Identities = 70/80 (88%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780
|||| | ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||
Sbjct 174254 TAACACGGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 174313
Query 11781 TTCGATTCCCCGACGAGGAG 11800
|||||||||||| || ||||
Sbjct 174314 TTCGATTCCCCGTCGGGGAG 174333
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |
Sbjct 174582 TAGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 174641
Query 8715 TTCCCCGACGAGGAG 8729
||||||| || ||||
Sbjct 174642 TTCCCCGTCGGGGAG 174656
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |
Sbjct 174866 TAGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 174925
Query 8715 TTCCCCGACGAGGAG 8729
||||||| || ||||
Sbjct 174926 TTCCCCGTCGGGGAG 174940
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 174333 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 174274
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 174273 TACTATCGAGGA 174262
Score = 89.7 bits (98), Expect = 7e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||
Sbjct 174583 AGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 174642
Query 11787 TCCCCGACGAGGAG 11800
|||||| || ||||
Sbjct 174643 TCCCCGTCGGGGAG 174656
Score = 89.7 bits (98), Expect = 7e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||
Sbjct 174867 AGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 174926
Query 11787 TCCCCGACGAGGAG 11800
|||||| || ||||
Sbjct 174927 TCCCCGTCGGGGAG 174940
>seq13653
Length=227863
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | ||||||||| |||||||||||
Sbjct 167591 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 167532
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 167531 CCTGTCGGGGAG 167520
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||| |||||||||||| ||||| |||| ||||| | ||||||||| |||||||||||
Sbjct 167591 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 167532
Query 11789 CCCGACGAGGAGG 11801
|| | || |||||
Sbjct 167531 CCTGTCGGGGAGG 167519
Score = 82.4 bits (90), Expect = 1e-10
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || | |||| |||||||| ||||||||| | |||| |||||||| |||||||||
Sbjct 167520 CTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 167579
Query 139413 TACTAACGAGGAT 139425
||||| |||||||
Sbjct 167580 TACTATCGAGGAT 167592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652724521506160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |