Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12471 122 8e-23 seq13894 109 5e-19 seq13338 98.7 1e-15 seq13941 91.5 1e-13 seq13827 87.8 2e-12 >seq12471 Length=105862 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| || |||||||| || ||||| |||| | ||| ||| |||||| Sbjct 73653 AAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCGTCTTCGAGC 73712 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| | ||||| || |||||||| || |||||||| || ||| Sbjct 73713 TGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTATCCTGAATC 73772 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | ||||||| | |||||||| || | || | ||||| || Sbjct 73773 TTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAAGTAATAGTTTTTCCA 73832 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || ||||| || |||||||||||| Sbjct 73833 GTGAGGGTTTTAACAAAAATCTGCATG 73859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| || |||||||||| | ||| | | | || || | || || || Sbjct 73144 GTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCA-TCTTCCAATTGTTTTCC 73202 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||| || || ||||| || ||||| ||||| ||||| || Sbjct 73203 AGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTT 73262 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | |||||| | ||||| || |||| || | ||||| || || || || Sbjct 73263 TACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGT 73322 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || ||||||||||| Sbjct 73323 TTTGACAAAAATCTGCAT 73340 >seq13894 Length=1211295 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || ||||||||| || || | | | || || | Sbjct 231511 AAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCA-TCTTCCAA 231569 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| ||||| |||| | || || |||||||| ||||||||||| ||||| ||| Sbjct 231570 TTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGAT 231629 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| | ||||| ||||| | || || || |||| ||| | ||| || || Sbjct 231630 TTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCC 231689 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| | |||||| |||||||||||||| Sbjct 231690 GGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || ||||||||| || || | | | || || | | Sbjct 231970 ATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCA-TCTTCCAATT 232028 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| |||||| | || | || ||||| || || |||||||| || ||||| ||| | Sbjct 232029 GCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTGGATTT 232088 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||| | || || || || | |||| |||||| || | Sbjct 232089 TCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAG 232148 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | | ||||| || ||||||||||| Sbjct 232149 TTAAGGTTTTCACAAAAATCTGCAT 232173 >seq13338 Length=646138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 120685 TCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCA 120744 ||||| || ||||||| |||||||| | || |||| | | ||||| | || Sbjct 454041 TCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATTGACGCG 454100 Query 120745 AAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAAC 120804 || || |||||||| | ||| || ||| ||||| |||| || |||||| | ||| Sbjct 454101 AATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAGCGATGATTCGCTCGCCGAAC 454160 Query 120805 GTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGC 120864 |||||||| ||| | ||||||| | | |||||| ||||| |||||||| || ||| Sbjct 454161 GTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCACACATGGC 454220 Query 120865 ATCCGCTCGAACGCGTT 120881 ||| ||||| |||||| Sbjct 454221 ATCGTCTCGATCGCGTT 454237 >seq13941 Length=98454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 196/288 (68%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTG-ATGTAGAATAT 120737 |||| || ||||| ||||||| || ||||||| ||| ||| || || | || || Sbjct 98367 ATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCT--CGTTTTTCATCCAAAAAAT 98310 Query 120738 GGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 | || || ||||| || || | || || || || || || || | ||||| Sbjct 98309 CGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCTACAACTCGCTC 98250 Query 120798 GGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCAC 120857 | | ||||||||||||||| | ||||||| | | |||||| ||||| || ||||| Sbjct 98249 GCCGAACGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACGCCTTCTTACGCAC 98190 Query 120858 GCACGGCATCCGCTCGAACGCGTTCAGCAGCATG-TCGCGCTCGCCCTCCTCCGCAATCA 120916 |||||| ||| ||||| ||| || | || ||| | |||| | ||| ||| Sbjct 98189 GCACGGAATCGTCTCGATCGCATTAAACA-AATGATGTCGCTTCATCGAGTCCTGAATGT 98131 Query 120917 GCTGATGGATGAGCAGATTGTACATTTCCGTGTGCACGCACTCGATCA 120964 | || ||| | ||| |||||||||||| ||||||| |||||||| Sbjct 98130 ACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGATCA 98083 >seq13827 Length=723868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| || || | |||||||| | || |||| ||||| ||| |||||||||||| || Sbjct 454838 CTCTTCGGGAGAACTGTACTCGATAATTTCGGTGCACAAATTACTGCATTTGATCGTTCC 454779 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | || || || || || || | |||| ||||||||||||| || ||||||| || Sbjct 454778 TAAATTTTTCTGGTTACTTTTTCGATTGCTCGCGTCCTTGTACGTCAAGTACGGTGTACC 454719 Query 148970 AGTTTCCACCTGCGTTTC 148987 ||||||||||| | ||| Sbjct 454718 TGTTTCCACCTGAGATTC 454701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483331735760360