Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 150 1e-31
seq13894 136 3e-27
>seq12471
Length=105862
Score = 150 bits (166), Expect = 1e-31
Identities = 173/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| |||||||| | | |||||| || || || ||||| || ||||||||||||
Sbjct 73113 ACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCT 73172
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||||||| | || |||||||||||||| || |||||||||||||| ||||| | ||
Sbjct 73173 GAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 73232
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| ||| || | || |||| || | |||||||||| || |
Sbjct 73233 AATCCCTTCTTTGTCTTGAATCTT-GGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAA 73291
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||| || ||||| || || | ||||| ||||| |||||||||
Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCATA 73341
Score = 122 bits (134), Expect = 6e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| || | |||||||| |||||| || ||||| ||||||||||||
Sbjct 72596 ACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCT 72655
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||| || | || |||||||||||||| || |||||||||||||| ||||| | ||
Sbjct 72656 CAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 72715
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || ||||| || || || | || |||| || | ||||| || | ||| |
Sbjct 72716 GATCCCCTCTTTATCTTGGATCTT-GGCTTTGACATTTTCGATCGTGTCACTAGGTTCAA 72774
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || || || || || || ||||| |||||
Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| |||||||| | | |||||| || || ||| ||||| || |||||||| |||
Sbjct 72368 ACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCT 72427
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| | || ||||| ||||| ||||||||||||| |||||| ||||| | ||
Sbjct 72428 TAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || |||||| | || |||| || | |||||||||| || |
Sbjct 72488 GATTCCTTCCTTATCTTGAATTTT-AGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAA 72546
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || || || | ||||| |||||||||||||||
Sbjct 72547 CTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCATA 72596
Score = 113 bits (124), Expect = 3e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
|||||| || ||||| ||||| || |||||||| ||| | ||||| | || ||
Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
||||||||| ||||| || ||||||||||| |||||| | || | |||||||||||
Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || |||| |||| || | ||| || |||| || || || | || || ||||
Sbjct 73541 GATCTTGGCTTTC-ACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTT 73599
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | ||||| || |||||||||||
Sbjct 73600 TTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
Score = 105 bits (116), Expect = 4e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594
||||| |||||||| || || ||||| || |||||||||||| |||||||| |
Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957
Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654
|| || | |||||| || ||||| || | |||||| |||||| | || | |||||||||
Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTG 73017
Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713
|| || || | || |||| || | ||||| || | || || || | ||||||
Sbjct 73018 TCTTGGATCTT-GGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGAT 73076
Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || || || | ||||| || ||||| ||||||
Sbjct 73077 GGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCATA 73113
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597
|| ||||| || || ||| ||| ||||| |||||||||||| | |||||| | ||
Sbjct 72156 AAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCC 72215
Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657
|| | |||||| || ||||| ||||| ||||| || || |||| | || ||||||||
Sbjct 72216 TCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTCT 72275
Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716
|| || | | |||| || | |||||| |||| || || || | ||||| ||
Sbjct 72276 TGGATCTT-AGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGT 72334
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || || | ||||| |||||||||||||||
Sbjct 72335 CTTGCCAGTCAGGGTTTTGACAAAGATCTGCATA 72368
>seq13894
Length=1211295
Score = 136 bits (150), Expect = 3e-27
Identities = 177/241 (73%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || |||||||||||||| | || | ||| || || |||||| || |||
Sbjct 231935 AAAATCTGCATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATG 231994
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
||||||||||| | || || | || |||||||| ||||| || || ||||| || |||
Sbjct 231995 TTGTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGC 232054
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|||||| | || | || |||||||| |||||| | | ||| | || | ||||||
Sbjct 232055 TGATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTC-GCCTTAACGTTTTCAATGGTGTC 232113
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| ||| || || | ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 232114 TGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Query 33750 A 33750
|
Sbjct 232174 A 232174
Score = 129 bits (142), Expect = 4e-25
Identities = 169/230 (73%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGT-GCTCTCTTTTTGTATGTTGTAATCGG 33580
||| ||||||||||| | ||| | ||| || || | | |||| || ||||||||||| |
Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| | || || | || |||| |||||| |||||||| ||||||||||||||||| | |
Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| |||||| ||| || | || | || ||| | |||
Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTC-ACGTTTTCGATTGTATCGGAAGGTTCG 231895
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| |||||| || || || ||||| ||||| || || ||||||||
Sbjct 231896 ACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 127 bits (140), Expect = 1e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||||||| || || |||||||| ||||| || || || ||||||||||||||
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || |||||||| ||||| |||||||| ||||| || || || | ||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| |||||| | | |||| || | |||||| || ||| ||
Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTC-GCCTTGACATTCTCAATGGTGTCCGATGGTTCGAC 231668
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| | || || || || || ||||| ||||| || || |||||||||
Sbjct 231669 TTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCATA 231717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328644954386880
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