Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13894 141 2e-28 seq12471 109 1e-18 >seq13894 Length=1211295 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || |||||||| |||||||||||||| ||| || ||| Sbjct 232170 CAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCAGAC 232111 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || || ||||| ||||| || || || || ||| Sbjct 232110 ACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAGCAA 232051 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| |||||||| ||||||||||| |||| ||| ||||||||||| || Sbjct 232050 CGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAACATC 231991 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || ||||| ||||| Sbjct 231990 CAGAAAGAGTCAACCCTTCATCTTGT 231965 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || || || | ||||| ||| || ||||| | || Sbjct 231701 AAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCGGACACCATTGAGAAT 231642 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||| || || ||| ||| | | || || Sbjct 231641 GTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAACAACGTTTAATTTTT 231582 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| ||||||||||| | || ||| ||||||||||| ||||||| || || Sbjct 231581 GCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAACATCCAGAAGGAATCG 231522 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||| || | |||||| || Sbjct 231521 ACTCTGCATTTGGTTTTGCGA 231501 >seq12471 Length=105862 Score = 109 bits (120), Expect = 1e-18 Identities = 151/207 (73%), Gaps = 12/207 (6%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| |||||| ||||| |||||||| || || | ||||| || ||| Sbjct 73337 CAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC--- 73281 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| ||||| ||||||||||| |||||||| ||| ||||| | Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGA---T 73224 Query 206290 CAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 ||| || || || ||||| ||||| || |||||||||||| | || | ||||||| Sbjct 73223 CAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTAC 73164 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| || || |||||| Sbjct 73163 AACATCCAGAAAGAATCGACGCTTCAC 73137 Score = 109 bits (120), Expect = 1e-18 Identities = 153/207 (74%), Gaps = 12/207 (6%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| || |||||| ||||| |||||||| || || |||||||| || |||| | Sbjct 73627 CAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAGTGAT 73568 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 || | |||| | ||||| || ||| ||||| |||||||| ||| || || | Sbjct 73567 ACCATTGA-GAATGTG-AAAGCCAA-GATCCAAGACAAAGAAGGGATTCCTCCAGA---T 73514 Query 206290 CAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 ||| || || ||||||||||| || || ||||||||||| | |||||| ||| ||| Sbjct 73513 CAACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTAC 73454 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| || ||||||||| Sbjct 73453 AACATTCAGAAAGAATCAACTCTTCAC 73427 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||||| || || ||| | |||||| ||||| || ||||| Sbjct 72799 ACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGTGACACGATCGAAAATGTCAAAGCC 72740 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATCTTCGCCGG 206309 || ||| ||||| ||||| || || ||||| |||| || || || ||||| || Sbjct 72739 AA-GATCCAAGATAAAGAGGGGATCCCTCCGGA---TCAACAGCGTTTGATTTTCGCTGG 72684 Query 206310 AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCT 206369 ||| || ||||||||||| | || ||| |||||||||| |||| || || || ||||| Sbjct 72683 AAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAACATCCAAAAGGAATCCACTCT 72624 Query 206370 TCA 206372 || Sbjct 72623 GCA 72621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181597620897619