Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 141 2e-28
seq12471 109 1e-18
>seq13894
Length=1211295
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| | || |||||||| |||||||||||||| ||| || |||
Sbjct 232170 CAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCAGAC 232111
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| || ||| || || ||||| ||||| || || || || |||
Sbjct 232110 ACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAGCAA 232051
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | |||||||| |||||||| ||||||||||| |||| ||| ||||||||||| ||
Sbjct 232050 CGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAACATC 231991
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||| || ||||| |||||
Sbjct 231990 CAGAAAGAGTCAACCCTTCATCTTGT 231965
Score = 87.8 bits (96), Expect = 4e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || ||||| || || || | ||||| ||| || ||||| | ||
Sbjct 231701 AAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCGGACACCATTGAGAAT 231642
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || || || || |||||||| || || ||| ||| | | || ||
Sbjct 231641 GTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAACAACGTTTAATTTTT 231582
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| |||||||| ||||||||||| | || ||| ||||||||||| ||||||| || ||
Sbjct 231581 GCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAACATCCAGAAGGAATCG 231522
Query 206365 ACTCTTCACCTTGTTTTGAGA 206385
||||| || | |||||| ||
Sbjct 231521 ACTCTGCATTTGGTTTTGCGA 231501
>seq12471
Length=105862
Score = 109 bits (120), Expect = 1e-18
Identities = 151/207 (73%), Gaps = 12/207 (6%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229
||||| ||| |||||| ||||| |||||||| || || | ||||| || |||
Sbjct 73337 CAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC--- 73281
Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289
||||| |||| ||||| ||||||||||| |||||||| ||| ||||| |
Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGA---T 73224
Query 206290 CAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346
||| || || || ||||| ||||| || |||||||||||| | || | |||||||
Sbjct 73223 CAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTAC 73164
Query 206347 AACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| || || ||||||
Sbjct 73163 AACATCCAGAAAGAATCGACGCTTCAC 73137
Score = 109 bits (120), Expect = 1e-18
Identities = 153/207 (74%), Gaps = 12/207 (6%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229
||||| || |||||| ||||| |||||||| || || |||||||| || |||| |
Sbjct 73627 CAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAGTGAT 73568
Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289
|| | |||| | ||||| || ||| ||||| |||||||| ||| || || |
Sbjct 73567 ACCATTGA-GAATGTG-AAAGCCAA-GATCCAAGACAAAGAAGGGATTCCTCCAGA---T 73514
Query 206290 CAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346
||| || || ||||||||||| || || ||||||||||| | |||||| ||| |||
Sbjct 73513 CAACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTAC 73454
Query 206347 AACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| | |||||||| || |||||||||
Sbjct 73453 AACATTCAGAAAGAATCAACTCTTCAC 73427
Score = 86.0 bits (94), Expect = 1e-11
Identities = 132/183 (72%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|| || || || |||||||| || || ||| | |||||| ||||| || |||||
Sbjct 72799 ACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGTGACACGATCGAAAATGTCAAAGCC 72740
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATCTTCGCCGG 206309
|| ||| ||||| ||||| || || ||||| |||| || || || ||||| ||
Sbjct 72739 AA-GATCCAAGATAAAGAGGGGATCCCTCCGGA---TCAACAGCGTTTGATTTTCGCTGG 72684
Query 206310 AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCT 206369
||| || ||||||||||| | || ||| |||||||||| |||| || || || |||||
Sbjct 72683 AAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAACATCCAAAAGGAATCCACTCT 72624
Query 206370 TCA 206372
||
Sbjct 72623 GCA 72621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181597620897619
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |