Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12471 140 3e-28 seq13894 118 1e-21 >seq12471 Length=105862 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||||||||| | |||| ||||| ||||||||||| ||||| | || || | Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| ||||| || | | |||||||||||||||||||||| || || |||||||| Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTG 73017 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | ||| || | ||||| ||||| | ||| | Sbjct 73018 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATG 73077 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| ||||| | ||| || ||||| Sbjct 73078 GTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | |||| ||||| ||||||||||||||||||| || || |||||| Sbjct 73422 ACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCC 73481 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||||| |||| | |||||||||||||||||| || |||||||| || Sbjct 73482 AATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 73541 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | ||||| | ||||| ||||| | || | ||||| Sbjct 73542 ATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTT 73601 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | ||| |||||||| Sbjct 73602 CCAGTGAGTGTTTTGACGAAGATCTGCAT 73630 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| ||||||||||||||||| | || || ||| || Sbjct 72387 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCC 72446 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||||||||| | | || |||||||||||||| || || || ||||| ||||| | Sbjct 72447 AACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGA 72506 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | || ||| | ||||| ||||||| || | || || Sbjct 72507 ATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTTT 72566 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | || |||||||| Sbjct 72567 CCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| | ||| |||||||| | | | || ||||| || |||||||||||||| | || Sbjct 73638 CGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTG 73697 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||||||||| || || | | || | ||||||||||| ||||| || ||| Sbjct 73698 CGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCT 73757 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| ||| || |||| | || | || ||| | |||||||| || | Sbjct 73758 TCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAA 73817 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || | ||||| ||||| || ||||| | ||||||||||||| Sbjct 73818 GTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGA 73860 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||| ||||| | || || |||||| | ||||| || | Sbjct 73147 GATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCG 73206 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | |||||||||||| ||||| || |||||||| || ||| || ||| | Sbjct 73207 AAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACA 73266 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| ||| | ||||| ||||||| ||| | ||||| ||||| || ||||| Sbjct 73267 TTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTG 73326 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 73327 ACAAAAATCTGCAT 73340 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||||||||| | | || || ||||| |||||||| ||||||| ||||| Sbjct 72605 CAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACG 72664 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||| || | | || | |||||||||||| ||||| || || || Sbjct 72665 ACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTC 72724 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || ||| | | ||| | || || | || || || || | || Sbjct 72725 TTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGT 72784 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||||| || || | ||| || |||||| Sbjct 72785 GATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824 >seq13894 Length=1211295 Score = 118 bits (130), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTT-TGAATGTTGTAGTCGCTCATGGTAC 131963 ||| |||| || | ||| | | | || || ||| || |||||||| || || ||| | Sbjct 231726 CAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTC 231785 Query 131964 GCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTT 132023 | |||||| || |||||||||| | |||| | |||||| ||||| ||||| ||||||| Sbjct 231786 GGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTT 231845 Query 132024 CTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 |||| || ||||| |||| | ||| | ||||||| || || ||||| | || Sbjct 231846 CTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCG 231905 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | || || ||||| | |||||| | |||||||||||| Sbjct 231906 TGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || ||||| |||| ||| | | | || || || || |||||||||||| | ||| || Sbjct 232184 AAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGG 232243 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| | || || || | | | |||| || || ||||| || || || |||||| Sbjct 232244 CCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCT 232303 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 ||||| ||||| |||| | ||| | ||||||| ||||| ||||||| || Sbjct 232304 TTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTT 232363 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||| || | ||||| | ||||||||||| Sbjct 232364 ATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||||||||||||| | | || || || || |||||||| ||| || ||| || Sbjct 231498 CAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCG 231557 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | || || || | | | |||| ||| ||||| || || || |||||||| Sbjct 231558 GCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTC 231617 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||||| || | | || | || || | || || ||||||| || Sbjct 231618 TTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGT 231677 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || | |||||| | |||||||||||| Sbjct 231678 AATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476523390344040