Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 140 3e-28
seq13894 118 1e-21
>seq12471
Length=105862
Score = 140 bits (154), Expect = 3e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|| ||||||||||| | |||| ||||| ||||||||||| ||||| | || || |
Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|||||||| ||||| || | | |||||||||||||||||||||| || || ||||||||
Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTG 73017
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || ||| | | ||| | ||| || | ||||| ||||| | ||| |
Sbjct 73018 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATG 73077
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || |||||||| ||||| | ||| || |||||
Sbjct 73078 GTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 129 bits (142), Expect = 6e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | |||| ||||| ||||||||||||||||||| || || ||||||
Sbjct 73422 ACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCC 73481
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
| |||||||||| |||| | |||||||||||||||||| || |||||||| ||
Sbjct 73482 AATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 73541
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || ||||| | || | ||||| | ||||| ||||| | || | |||||
Sbjct 73542 ATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTT 73601
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || ||||| | ||| ||||||||
Sbjct 73602 CCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
Score = 125 bits (138), Expect = 7e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | || ||||| ||||||||||||||||| | || || ||| ||
Sbjct 72387 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTCC 72446
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
| ||||||||||| | | || |||||||||||||| || || || ||||| ||||| |
Sbjct 72447 AACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTGA 72506
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| ||| | | || | || ||| | ||||| ||||||| || | || ||
Sbjct 72507 ATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTTT 72566
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| |||||||| | || ||||||||
Sbjct 72567 CCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 118 bits (130), Expect = 1e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
||||| | ||| |||||||| | | | || ||||| || |||||||||||||| | ||
Sbjct 73638 CGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTG 73697
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| ||||||||||| || || | | || | ||||||||||| ||||| || |||
Sbjct 73698 CGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCT 73757
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| ||||| ||| || |||| | || | || ||| | |||||||| || |
Sbjct 73758 TCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAA 73817
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125
|| | ||||| ||||| || ||||| | |||||||||||||
Sbjct 73818 GTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGA 73860
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| ||||| || |||||||| ||||| | || || |||||| | ||||| || |
Sbjct 73147 GATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCG 73206
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || | |||||||||||| ||||| || |||||||| || ||| || ||| |
Sbjct 73207 AAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACA 73266
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||| ||| | ||||| ||||||| ||| | ||||| ||||| || |||||
Sbjct 73267 TTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTG 73326
Query 132110 ATGAAAATCTGCAT 132123
| |||||||||||
Sbjct 73327 ACAAAAATCTGCAT 73340
Score = 86.0 bits (94), Expect = 6e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| || | ||||||||| | | || || ||||| |||||||| ||||||| |||||
Sbjct 72605 CAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACG 72664
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||| | ||||| || | | || | |||||||||||| ||||| || || ||
Sbjct 72665 ACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTC 72724
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|||||| || || ||| | | ||| | || || | || || || || | ||
Sbjct 72725 TTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGT 72784
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
| || || ||||||| || || | ||| || ||||||
Sbjct 72785 GATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824
>seq13894
Length=1211295
Score = 118 bits (130), Expect = 1e-21
Identities = 159/220 (72%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTT-TGAATGTTGTAGTCGCTCATGGTAC 131963
||| |||| || | ||| | | | || || ||| || |||||||| || || ||| |
Sbjct 231726 CAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTC 231785
Query 131964 GCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTT 132023
| |||||| || |||||||||| | |||| | |||||| ||||| ||||| |||||||
Sbjct 231786 GGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTT 231845
Query 132024 CTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083
|||| || ||||| |||| | ||| | ||||||| || || ||||| | ||
Sbjct 231846 CTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCG 231905
Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| | || || ||||| | |||||| | ||||||||||||
Sbjct 231906 TGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965
|| ||||| |||| ||| | | | || || || || |||||||||||| | ||| ||
Sbjct 232184 AAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGG 232243
Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025
|||||| | || || || | | | |||| || || ||||| || || || ||||||
Sbjct 232244 CCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCT 232303
Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085
||||| ||||| |||| | ||| | ||||||| ||||| ||||||| ||
Sbjct 232304 TTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTT 232363
Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || ||||| || | ||||| | |||||||||||
Sbjct 232364 ATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| |||||||||||||| | | || || || || |||||||| ||| || ||| ||
Sbjct 231498 CAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCG 231557
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||| | || || || | | | |||| ||| ||||| || || || ||||||||
Sbjct 231558 GCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTC 231617
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||| || ||||| || | | || | || || | || || ||||||| ||
Sbjct 231618 TTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGT 231677
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || || || | |||||| | ||||||||||||
Sbjct 231678 AATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476523390344040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |