Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 125 6e-24
seq7061 102 7e-17
seq13894 95.1 1e-14
>seq12471
Length=105862
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233
||||| | ||||| ||||| | || ||||| | || || ||||||| || |||||
Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGA-GCCAAG 72537
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||| || |||||| | |||||| |||||| ||||| || || || || ||||||||
Sbjct 72536 CGACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCA 72477
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|| | || |||| | ||| ||||| | || |||| | | | | ||||| |||||
Sbjct 72476 ACAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAA 72417
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
||||| |||||||||||| |||| || ||| | || |||||||| ||
Sbjct 72416 CATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGG 72369
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233
||||| | ||||| ||||| | || |||||| | || ||| ||||||| || |||||
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGA-GCCAAG 73282
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||| ||||||||| | |||||| || ||| || ||||| || || || || |||||
Sbjct 73281 CGACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCA 73222
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|| | | |||| || || |||||| | ||||||| | | |||||||||||||
Sbjct 73221 ACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAA 73162
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| || |||||||| || |||| || ||| | || |||||||| ||
Sbjct 73161 CATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGG 73114
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||| | || || || | |||||| | |||||||| | |
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| |||||||| | || ||| || || || ||||| || || || || |||||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | || || | | || |||||||||||||||| | | | | |||||||||||
Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTACAAC 72933
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387
||||| |||||||| || ||||||| || |||
Sbjct 72932 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTA 72900
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | || || || || || || || || | ||||| | || || ||| | |
Sbjct 72824 CATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAG 72765
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || ||||| | || ||| || || ||||||||||| || || || |||||
Sbjct 72764 TGACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCA 72705
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|| | | |||| || || |||||| | ||||||| | | | | |||||||||||
Sbjct 72704 ACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAA 72645
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| ||||| |||||||| | ||||| || | | |||||||| ||
Sbjct 72644 CATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGG 72597
>seq7061
Length=6671
Score = 102 bits (112), Expect = 7e-17
Identities = 155/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 25176 TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACG 25235
|||| | ||||| ||||| ||||| || ||||| || ||||| || ||| || ||
Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGA-GCATTCG 2822
Query 25236 -ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||| ||| | | | ||| |||| ||| |||||||| || ||| | || || |||
Sbjct 2823 GATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAG 2882
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||| | || | | || ||||| | |||||||| | | | || |||||||||
Sbjct 2883 CAAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAAT 2942
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392
|| || |||||| ||| | |||||||| ||||||||
Sbjct 2943 ATACAGAAAGAAAACACTTTACATTTAGTATTAAGATT 2980
>seq13894
Length=1211295
Score = 95.1 bits (104), Expect = 1e-14
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| ||||||||||| | || || ||||||||||| ||| |
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAA-CCATC 231658
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || || ||| | || || ||||| || ||||| || || || ||||| ||
Sbjct 231657 GGACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCA 231598
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351
||| | | |||| | || || ||| | ||||||| ||| |||| |||||||
Sbjct 231597 ACAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTC--CGATTAC 231540
Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403
|| || || || ||||| || | ||||| || || |||||||||| ||||
Sbjct 231539 AACATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAA 231488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445012396920480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |