Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq12471 125 6e-24 seq7061 102 7e-17 seq13894 95.1 1e-14 >seq12471 Length=105862 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233 ||||| | ||||| ||||| | || ||||| | || || ||||||| || ||||| Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGA-GCCAAG 72537 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || |||||| | |||||| |||||| ||||| || || || || |||||||| Sbjct 72536 CGACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCA 72477 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | || |||| | ||| ||||| | || |||| | | | | ||||| ||||| Sbjct 72476 ACAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAA 72417 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| |||||||||||| |||| || ||| | || |||||||| || Sbjct 72416 CATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGG 72369 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233 ||||| | ||||| ||||| | || |||||| | || ||| ||||||| || ||||| Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGA-GCCAAG 73282 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| ||||||||| | |||||| || ||| || ||||| || || || || ||||| Sbjct 73281 CGACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCA 73222 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | | |||| || || |||||| | ||||||| | | ||||||||||||| Sbjct 73221 ACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAA 73162 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||| || |||| || ||| | || |||||||| || Sbjct 73161 CATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGG 73114 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || || | |||||| | |||||||| | | Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || ||| || || || ||||| || || || || ||||| Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | | || |||||||||||||||| | | | | ||||||||||| Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTACAAC 72933 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||||| |||||||| || ||||||| || ||| Sbjct 72932 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTA 72900 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || || || || || | ||||| | || || ||| | | Sbjct 72824 CATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAG 72765 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| || || ||||||||||| || || || ||||| Sbjct 72764 TGACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCA 72705 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | | |||| || || |||||| | ||||||| | | | | ||||||||||| Sbjct 72704 ACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAA 72645 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| |||||||| | ||||| || | | |||||||| || Sbjct 72644 CATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGG 72597 >seq7061 Length=6671 Score = 102 bits (112), Expect = 7e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 25176 TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACG 25235 |||| | ||||| ||||| ||||| || ||||| || ||||| || ||| || || Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGATTGCGA-GCATTCG 2822 Query 25236 -ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| ||| | | | ||| |||| ||| |||||||| || ||| | || || ||| Sbjct 2823 GATACCATCAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAG 2882 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || ||||| | |||||||| | | | || ||||||||| Sbjct 2883 CAAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAAT 2942 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392 || || |||||| ||| | |||||||| |||||||| Sbjct 2943 ATACAGAAAGAAAACACTTTACATTTAGTATTAAGATT 2980 >seq13894 Length=1211295 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||||||||| | || || ||||||||||| ||| | Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAA-CCATC 231658 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || || ||||| || ||||| || || || ||||| || Sbjct 231657 GGACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCA 231598 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | | |||| | || || ||| | ||||||| ||| |||| ||||||| Sbjct 231597 ACAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTC--CGATTAC 231540 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || ||||| || | ||||| || || |||||||||| |||| Sbjct 231539 AACATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAA 231488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445012396920480