Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq12471 131 2e-25 seq13894 125 6e-24 >seq12471 Length=105862 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| ||||| || | ||| ||||||||| |||||||||||| | Sbjct 72141 CCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTC 72200 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || || ||||| ||||| ||||| ||||| ||||| | ||| Sbjct 72201 AATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGA 72260 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| |||||| ||| | | || | | ||||| || | || || Sbjct 72261 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACT 72320 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||| ||||| ||||| |||||||| Sbjct 72321 TCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | |||| | |||||||| | || |||||||| |||||||||||| | Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || || || || || ||||| ||||| || |||| ||| Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| || || |||||| || | | || | | |||||| || | ||| ||| Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACC 72776 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||| || || || || || ||||| Sbjct 72777 TCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 >seq13894 Length=1211295 Score = 125 bits (138), Expect = 6e-24 Identities = 145/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 35546 TCCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | ||||||||| | || ||||| || ||||| ||||| Sbjct 231754 TCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAA 231813 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| ||||| || || ||||| ||| || ||||| | Sbjct 231814 GATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTT 231873 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || ||| | ||| || || | |||||| || || || || ||||||||||| Sbjct 231874 TTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCAC 231933 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 231934 GAAAATCTGCATTC 231947 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || | ||| |||||||| | || ||||| || ||||||||||||| Sbjct 231488 TTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGG 231547 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||||||| | || |||| ||||| |||||||| || || || || ||||| | | Sbjct 231548 ACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTG 231607 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || || |||||| ||| || ||| | | | | | ||||| | ||| | Sbjct 231608 GGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGA 231667 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || || || || || ||||||||||| || |||||||| Sbjct 231668 CTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||||| |||||| || | || |||| ||||| ||||| || Sbjct 231982 CTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAA 232041 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || ||||| || | || | || ||| ||||| ||| || ||| | | Sbjct 232042 GATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTT 232101 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| || |||| ||||| ||||| || || || |||||||| Sbjct 232102 TTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCAC 232161 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 232162 AAAAATCTGCAT 232173 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || | ||| | ||| |||| ||| | || ||||| || |||||||| |||| Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| | || |||| ||||| |||||||| || || || ||||| |||| || Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || || ||| ||| || ||||| || | | ||| ||| | || || Sbjct 232295 ATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACT 232354 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | || || || ||||| || || ||||||||||| ||||||||| Sbjct 232355 TCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATT 232402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450710546914120