Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq13894 147 2e-30 seq12471 136 4e-27 >seq13894 Length=1211295 Score = 147 bits (162), Expect = 2e-30 Identities = 173/230 (75%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTT-TGAATGTTGTAGTC-GC 134544 || ||||| | |||| ||| || || || || ||||||||| || |||||||| || | Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| | | | | || || || ||||| || ||||| ||||||||||||||||| || | Sbjct 231778 CAAGGTTCGGCCA-TCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| ||||| ||||| || || || | ||| ||||| | ||| | Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || ||||||||||| |||||||| |||||| Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| | |||||| || | || || || |||||||| || |||||||| ||| Sbjct 231488 TTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGG 231547 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || | || || || |||||||| ||||| || || ||||| | Sbjct 231548 ACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTG 231607 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| || || ||||| ||||| || | ||||| || | ||| | Sbjct 231608 GGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGA 231667 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| |||||||| || |||||||||||||| |||||||| ||||| Sbjct 231668 CTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | ||||| || || || || || |||||||| || |||||||||||| Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | || ||||| |||||||| || || |||||||| || || Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || |||||||| || || ||||| || | || | |||| || ||||| | || || Sbjct 232295 ATACCTTCTTTATCCTGGATTTTCGCCTTCA-CGTTTTCAATCGTATCGGAAGGCTCGAC 232353 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||||||| ||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 232354 TTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 >seq12471 Length=105862 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || |||||||| || |||||||||||||||| | ||| | || || Sbjct 72386 CACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTC 72445 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | |||||| || |||||||||| |||||| |||||||| || || ||||| || ||||| Sbjct 72446 CAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATCTTG 72505 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 |||||| ||| || || | |||||| | || || |||||||||||||| || Sbjct 72506 AATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGTCTT 72565 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | |||||| || || || ||||| Sbjct 72566 TCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| | | ||| || | || | || ||||| || || ||||||||||||| Sbjct 73630 TTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGC 73689 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| | ||| |||||||| || || || |||||||| ||||| |||||||| | Sbjct 73690 TAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAG 73749 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || ||||| || || || || | |||||| | |||| Sbjct 73750 GAATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCA 73809 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | |||||| ||||| || || | |||||||| ||||| ||||| Sbjct 73810 CCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||||||||| |||||||| |||| | || || || || | ||| Sbjct 72621 TGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCCAATTGT 72680 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || |||||||||||||| ||||| || || || || ||||| ||||| || || Sbjct 72681 TTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTTG 72740 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | ||||| | ||| || || | ||| ||||| || || || Sbjct 72741 GCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGTC 72800 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| |||||||| Sbjct 72801 AAGGTCTTAACGAAGATTTGCAT 72823 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| ||||| ||||| || || |||||||| |||| | ||| | || || Sbjct 73131 CACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTC 73190 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | ||||| || || |||||||||||||| ||||| || || || |||||||| ||||| Sbjct 73191 CAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCTTG 73250 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || ||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 73251 AATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTTT 73310 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| || ||||| ||||| Sbjct 73311 TCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || ||||| ||||| || ||||||||||| |||| || ||| || || ||||| ||| Sbjct 72910 TGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCGAGTTGT 72969 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | |||||| ||||| || || || |||||||| ||||| || || Sbjct 72970 TTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGATCTTG 73029 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | ||||| | || || || | || ||||| || || || Sbjct 73030 GCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCAGTC 73089 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| |||||||| Sbjct 73090 AGGGTTTTGACGAAGATTTGCAT 73112 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || || ||||| || |||||||||||||||| | ||| || || || Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | ||||| || || || ||||||||||| ||||| || || || |||||||| ||||| Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||| || || | || || | || || || | ||||||||||| Sbjct 73541 GATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTT 73600 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | ||||| ||||| || |||||| Sbjct 73601 TCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505305286662280