Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7637 138 9e-28 seq13458 132 4e-26 seq12159 122 7e-23 seq12995 104 2e-17 >seq7637 Length=48035 Score = 138 bits (152), Expect = 9e-28 Identities = 333/498 (67%), Gaps = 12/498 (2%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA- 40921 ||||| ||| | || || || || || || || | ||| ||||| ||||| |||||| | Sbjct 7755 GAAGGCGATGTGGGACCCGTGTACGGCTTCCAATGGCGGCATTTCGGAGCGAAATATAAA 7696 Query 40922 --CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGAT 40979 | | | | | ||||| || | ||||| | |||||||| | || || ||| Sbjct 7695 GGCGCAA---ATGCCGATTACACGCAACAAGGATTTGATCAATTGGAACATGTCATCGAT 7639 Query 40980 ACGATT--AAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 ||| |||| ||||| | || | || || ||| ||||||||||| | | Sbjct 7638 TTAATTCGAAATA--ATCCCTTCGACAGAGGCATCATCATGTCTTCGTGGAACCCATCAG 7581 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATG 41097 || || ||||| | | |||||||| | || ||| |||||||| | | | | Sbjct 7580 ACTTATCGAAAATGGCTCTCCGTCCTTGTCACGTATTGGCTCAATTTTACGTCTCCGAAG 7521 Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157 | ||| | || || || |||| || |||||| ||| |||||||| || || || || | Sbjct 7520 GCGAATTATCGTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCA 7461 Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTG 41217 |||| || || || | || ||||| | ||| | || ||||| || ||||| || |||| Sbjct 7460 ACATCGCTAGCTACTCCCTCCTCACTTGTATCCTGGCTCACGTGACTAATTTGAAGCCTG 7401 Query 41218 GTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAA 41277 | || ||| |||||| ||||| || | |||| ||||| | ||||| | || || | | Sbjct 7400 GAGACTTTATTCACAGTTTAGGCGACGCACATGTTTACTTGAATCATGTTGATGCGATTA 7341 Query 41278 CAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTG 41337 ||| || ||| || | ||| || | ||||| | ||| | ||| | || | | || Sbjct 7340 AAGAGCAGTTGAGCCGTACACCGCGATCTTTTCCGAAGCTTTTCATTGATCGAG-TATTC 7282 Query 41338 AA-AACATTGATGATTTT 41354 || ||||||||||| ||| Sbjct 7281 AACAACATTGATGAATTT 7264 >seq13458 Length=7495 Score = 132 bits (146), Expect = 4e-26 Identities = 224/321 (70%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||| || || | | ||||| || | ||||||||| || |||||||| || || ||| Sbjct 6173 CAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAAATTGCGATTGAGAAT 6232 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || |||| || |||||||||||| ||||| |||| |||||| | || | | || ||| Sbjct 6233 ATCTATTCTGAGATGTACAGTCTTTTGATAAATACTTACATCCAGGACACG-ATGAAAAG 6291 Query 44033 -CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 || ||||| || || || || || | ||| | | || || ||||| Sbjct 6292 AAATTATTTGTTCAACGCAATCGAGACGATGCCTTGTGTGCGCAAGAAGGCGTTGTGGGC 6351 Query 44092 CCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 ||| | ||||| ||| || | | ||||| || ||| | |||| || || | Sbjct 6352 TCTTGACTGGATCAGAAACAAAACGGCGACATTTGGCGAGCGAATCATCGCTTTCGCGGC 6411 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 || |||||||| |||||||| | || || ||| | ||||||||| |||||||||| || Sbjct 6412 CGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTTTGGCTAAAGAAACGCGG 6471 Query 44209 TTTGATGCCTGGGTTGACGTT 44229 | ||||||| || |||||||| Sbjct 6472 TCTGATGCCCGGATTGACGTT 6492 >seq12159 Length=131859 Score = 122 bits (134), Expect = 7e-23 Identities = 224/324 (69%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 19210 TTATTA--CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTT 19267 |||||| || ||||| || | || | ||| |||||| || ||| |||||| |||| Sbjct 87141 TTATTAATCCGGATTGGGATTTCAATAAGATGGGAATTGGCGGTTTGGATAAAGAATTTT 87200 Query 19268 CTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAAT 19327 | | || ||| | | || |||| ||| | || ||| || | || | | | |||| Sbjct 87201 CAGCTATTTTTAGACGTGCTTTTGCATCGAGAGTATTTCCTCCTGAAATTGTGGAGCAAT 87260 Query 19328 TGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACAT 19387 | || |||||||||||| ||| || | |||| ||||| || || || |||||| Sbjct 87261 TAGGTTGTAAACATGTTAAAGGAATTCTCCTTTTCGGGCCGCCAGGGACAGGCAAAACAC 87320 Query 19388 TAATTGCGAGAGAACTTAGTAAATTACTTACAAAAC-----AACCTCCCAAAATTGTAAA 19442 | || || || | | | ||| | ||| || | ||||| |||||||| || Sbjct 87321 TTATGGCTCGACAGATCGGCAAAATG-TTA-AACGCTCGCGAACCT---AAAATTGTTAA 87375 Query 19443 TGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTT 19502 ||||||| | || | | |||||||| ||| ||||||||| ||||||||||| || || Sbjct 87376 TGGTCCTCAGATTCTCGACAAATATGTCGGTGAATCGGAAGCTAATGTACGACGCTTATT 87435 Query 19503 TGCTGACGCTGAAGAAGAACAAAA 19526 ||||||||| ||||| ||| |||| Sbjct 87436 TGCTGACGCAGAAGATGAAGAAAA 87459 >seq12995 Length=433444 Score = 104 bits (114), Expect = 2e-17 Identities = 94/117 (80%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 44114 GATTC-TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 ||||| |||||| || || | ||||| ||||||| || ||||| |||||||| || || Sbjct 321771 GATTCCTTTTGGCGATAGATTAGTCGCATTTGCAGCGGTCGAAGGAATTTTCTTCTCGGG 321830 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 ||| ||||| | ||| |||||||| || || | |||||||||||||| |||||||| Sbjct 321831 ATCATTTGCCGGCATTTTTTGGTTGAAAAAGAGGGGTTTGATGCCTGGTTTGACGTT 321887 Score = 102 bits (112), Expect = 6e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||||| |||||||||| || ||||| | || || ||||| ||||| || || ||| Sbjct 320702 TTGCTTAAAGAAAATCCGCAAAGATTTGTTCTATTCCCGATTCAGTATCAAGATATTTGG 320761 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || | ||||||||||| || || || || ||||| | ||| ||||||||||||| ||| Sbjct 320762 CAGTTCTACAAAAAAGCTCAAGCTTCTTTCTGGACTGTAGAGGAAGTTGATTTGAGTAAT 320821 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTT 43839 || ||| | | ||| | | || || | || |||| ||||| Sbjct 320822 GATTTAAAAGACTGGGATTCGTTGAAGGTATAAAAAAAGCATTT 320865 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 43851 TTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTG 43910 ||||||| |||||||| ||||| || || || || ||||||||||| || | || Sbjct 320951 TTTTGGCTTTTTTTGCGGCGAGTGATGGAATTGTTAATGAAAATTTAGTGGAAAGATTCA 321010 Query 43911 CGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATT 43960 || ||||| ||| | |||||||| | |||||||||||||||||| || Sbjct 321011 GTCAGGAAGTACAAATCCCAGAAGCGAGGTGTTTTTATGGGTTTCAAGTT 321060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397384604357695