Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq7637 138 9e-28
seq13458 132 4e-26
seq12159 122 7e-23
seq12995 104 2e-17
>seq7637
Length=48035
Score = 138 bits (152), Expect = 9e-28
Identities = 333/498 (67%), Gaps = 12/498 (2%)
Strand=Plus/Minus
Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA- 40921
||||| ||| | || || || || || || || | ||| ||||| ||||| |||||| |
Sbjct 7755 GAAGGCGATGTGGGACCCGTGTACGGCTTCCAATGGCGGCATTTCGGAGCGAAATATAAA 7696
Query 40922 --CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGAT 40979
| | | | | ||||| || | ||||| | |||||||| | || || |||
Sbjct 7695 GGCGCAA---ATGCCGATTACACGCAACAAGGATTTGATCAATTGGAACATGTCATCGAT 7639
Query 40980 ACGATT--AAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037
||| |||| ||||| | || | || || ||| ||||||||||| | |
Sbjct 7638 TTAATTCGAAATA--ATCCCTTCGACAGAGGCATCATCATGTCTTCGTGGAACCCATCAG 7581
Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATG 41097
|| || ||||| | | |||||||| | || ||| |||||||| | | | |
Sbjct 7580 ACTTATCGAAAATGGCTCTCCGTCCTTGTCACGTATTGGCTCAATTTTACGTCTCCGAAG 7521
Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157
| ||| | || || || |||| || |||||| ||| |||||||| || || || || |
Sbjct 7520 GCGAATTATCGTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCA 7461
Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTG 41217
|||| || || || | || ||||| | ||| | || ||||| || ||||| || ||||
Sbjct 7460 ACATCGCTAGCTACTCCCTCCTCACTTGTATCCTGGCTCACGTGACTAATTTGAAGCCTG 7401
Query 41218 GTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAA 41277
| || ||| |||||| ||||| || | |||| ||||| | ||||| | || || | |
Sbjct 7400 GAGACTTTATTCACAGTTTAGGCGACGCACATGTTTACTTGAATCATGTTGATGCGATTA 7341
Query 41278 CAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTG 41337
||| || ||| || | ||| || | ||||| | ||| | ||| | || | | ||
Sbjct 7340 AAGAGCAGTTGAGCCGTACACCGCGATCTTTTCCGAAGCTTTTCATTGATCGAG-TATTC 7282
Query 41338 AA-AACATTGATGATTTT 41354
|| ||||||||||| |||
Sbjct 7281 AACAACATTGATGAATTT 7264
>seq13458
Length=7495
Score = 132 bits (146), Expect = 4e-26
Identities = 224/321 (70%), Gaps = 5/321 (2%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
||||| || || | | ||||| || | ||||||||| || |||||||| || || |||
Sbjct 6173 CAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAAATTGCGATTGAGAAT 6232
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032
|| |||| || |||||||||||| ||||| |||| |||||| | || | | || |||
Sbjct 6233 ATCTATTCTGAGATGTACAGTCTTTTGATAAATACTTACATCCAGGACACG-ATGAAAAG 6291
Query 44033 -CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091
|| ||||| || || || || || | ||| | | || || |||||
Sbjct 6292 AAATTATTTGTTCAACGCAATCGAGACGATGCCTTGTGTGCGCAAGAAGGCGTTGTGGGC 6351
Query 44092 CCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148
||| | ||||| ||| || | | ||||| || ||| | |||| || || |
Sbjct 6352 TCTTGACTGGATCAGAAACAAAACGGCGACATTTGGCGAGCGAATCATCGCTTTCGCGGC 6411
Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208
|| |||||||| |||||||| | || || ||| | ||||||||| |||||||||| ||
Sbjct 6412 CGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTTTGGCTAAAGAAACGCGG 6471
Query 44209 TTTGATGCCTGGGTTGACGTT 44229
| ||||||| || ||||||||
Sbjct 6472 TCTGATGCCCGGATTGACGTT 6492
>seq12159
Length=131859
Score = 122 bits (134), Expect = 7e-23
Identities = 224/324 (69%), Gaps = 12/324 (4%)
Strand=Plus/Plus
Query 19210 TTATTA--CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTT 19267
|||||| || ||||| || | || | ||| |||||| || ||| |||||| ||||
Sbjct 87141 TTATTAATCCGGATTGGGATTTCAATAAGATGGGAATTGGCGGTTTGGATAAAGAATTTT 87200
Query 19268 CTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAAT 19327
| | || ||| | | || |||| ||| | || ||| || | || | | | ||||
Sbjct 87201 CAGCTATTTTTAGACGTGCTTTTGCATCGAGAGTATTTCCTCCTGAAATTGTGGAGCAAT 87260
Query 19328 TGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACAT 19387
| || |||||||||||| ||| || | |||| ||||| || || || ||||||
Sbjct 87261 TAGGTTGTAAACATGTTAAAGGAATTCTCCTTTTCGGGCCGCCAGGGACAGGCAAAACAC 87320
Query 19388 TAATTGCGAGAGAACTTAGTAAATTACTTACAAAAC-----AACCTCCCAAAATTGTAAA 19442
| || || || | | | ||| | ||| || | ||||| |||||||| ||
Sbjct 87321 TTATGGCTCGACAGATCGGCAAAATG-TTA-AACGCTCGCGAACCT---AAAATTGTTAA 87375
Query 19443 TGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTT 19502
||||||| | || | | |||||||| ||| ||||||||| ||||||||||| || ||
Sbjct 87376 TGGTCCTCAGATTCTCGACAAATATGTCGGTGAATCGGAAGCTAATGTACGACGCTTATT 87435
Query 19503 TGCTGACGCTGAAGAAGAACAAAA 19526
||||||||| ||||| ||| ||||
Sbjct 87436 TGCTGACGCAGAAGATGAAGAAAA 87459
>seq12995
Length=433444
Score = 104 bits (114), Expect = 2e-17
Identities = 94/117 (80%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 44114 GATTC-TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172
||||| |||||| || || | ||||| ||||||| || ||||| |||||||| || ||
Sbjct 321771 GATTCCTTTTGGCGATAGATTAGTCGCATTTGCAGCGGTCGAAGGAATTTTCTTCTCGGG 321830
Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229
||| ||||| | ||| |||||||| || || | |||||||||||||| ||||||||
Sbjct 321831 ATCATTTGCCGGCATTTTTTGGTTGAAAAAGAGGGGTTTGATGCCTGGTTTGACGTT 321887
Score = 102 bits (112), Expect = 6e-17
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735
||||||| |||||||||| || ||||| | || || ||||| ||||| || || |||
Sbjct 320702 TTGCTTAAAGAAAATCCGCAAAGATTTGTTCTATTCCCGATTCAGTATCAAGATATTTGG 320761
Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795
|| | ||||||||||| || || || || ||||| | ||| ||||||||||||| |||
Sbjct 320762 CAGTTCTACAAAAAAGCTCAAGCTTCTTTCTGGACTGTAGAGGAAGTTGATTTGAGTAAT 320821
Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTT 43839
|| ||| | | ||| | | || || | || |||| |||||
Sbjct 320822 GATTTAAAAGACTGGGATTCGTTGAAGGTATAAAAAAAGCATTT 320865
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 43851 TTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTG 43910
||||||| |||||||| ||||| || || || || ||||||||||| || | ||
Sbjct 320951 TTTTGGCTTTTTTTGCGGCGAGTGATGGAATTGTTAATGAAAATTTAGTGGAAAGATTCA 321010
Query 43911 CGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATT 43960
|| ||||| ||| | |||||||| | |||||||||||||||||| ||
Sbjct 321011 GTCAGGAAGTACAAATCCCAGAAGCGAGGTGTTTTTATGGGTTTCAAGTT 321060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397384604357695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |