Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq12471 143 2e-29 seq13894 87.8 2e-12 >seq12471 Length=105862 Score = 143 bits (158), Expect = 2e-29 Identities = 176/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| ||||||| |||||||||||| || || || ||||| || || ||||||||||| Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||||||||| || || ||| |||| | ||||||||||| || || Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| |||| | | || | ||||| | | || || Sbjct 73752 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACC 73811 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 || | ||| |||| ||| || || || ||||| ||||| || ||||| | | ||||||| Sbjct 73812 TCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT-GATTCTAAAAA 73869 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27031 ACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCT 27090 |||| || |||||||| | ||| || ||||| ||||| ||||| ||||| | |||| Sbjct 72896 ACCGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGAC 72955 Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 | |||||||| ||||| || || | || |||||||||||||| || || | || |||| Sbjct 72956 CATCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTT 73015 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| ||| | |||| | |||||| | | || ||||| | || | Sbjct 73016 TGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGA 73075 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||||| ||||| ||||| || |||||||||||| Sbjct 73076 TGGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCATA 73113 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | |||||| | |||||||| | || || || ||||| || ||||| |||||| Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | ||||| || ||| |||| | ||||||||||||||| || Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| ||||||| ||| | |||| | ||||| | | |||||| Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACC 72776 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||| || | ||||| |||| || || || ||||||||||| Sbjct 72777 TCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||||| | ||||| || | || || ||||| ||||| ||||||||||| Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || | |||||||||||| |||| |||||||||||||| || || Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| || || ||| | | || | ||||| | | |||||| Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACT 72548 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || || |||||||| |||||||| |||||| Sbjct 72549 TCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCATA 72596 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||||| | ||||| || | ||| || ||||| || || ||||| ||||| Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||||| || ||| |||| | ||||||||||||||| || Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| ||| | | || | |||||| | | |||||| Sbjct 73234 ATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACT 73293 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||| || || || ||||| ||||| || |||||| Sbjct 73294 TCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCATA 73341 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27031 ACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCT 27090 |||| | ||||| || | || || ||||| ||||| ||||||||||||| |||| Sbjct 73414 ACCGGAGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGAC 73473 Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 | ||||| | |||||||||||| | || | |||||||||||| || || | || |||| Sbjct 73474 CATCTTCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTT 73533 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| ||||| | || | || || | | || ||||| | || | Sbjct 73534 TGTCTTGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAA 73593 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | ||| || || || ||||| || ||||| ||||| Sbjct 73594 TGGTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630 >seq13894 Length=1211295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || |||||||||| ||| | || || || || || || ||||||||| | | | || Sbjct 232184 AAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGG 232243 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | || || || || |||| | || || |||||||| || | ||| ||| Sbjct 232244 CCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCT 232303 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||| || |||| | |||| | || || | | || ||||| |||||| Sbjct 232304 TTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTT 232363 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || || | ||||||||||| || ||||| Sbjct 232364 ATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| |||| ||| | ||| | || || ||||| || || ||||| ||| | Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| | || || || ||| | || | || || ||||| || || Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || ||| || || | | |||| | ||||||| | ||| ||| Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||| || || | ||||||||||| || |||||| Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCATA 232174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424858068369768