Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14281 95.1 1e-14 seq12159 89.7 6e-13 >seq14281 Length=634769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| |||| ||||||||||| |||||||| |||||| ||||| ||||| Sbjct 479405 GTGAAAATGTATCGAGGACTTGCAGCATCTTTGCCACCTTGAAGACGTGTACCAAATTGA 479346 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||| | || | || ||| || |||||||| || |||||||| | | Sbjct 479345 CCAATTGGCTGCAAAATATTAATATTATTGCTTCCTACAAAGTTCTGCGCCAAGTTTATA 479286 Query 117425 ATCGT 117429 || || Sbjct 479285 ATGGT 479281 >seq12159 Length=131859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| |||||||| || || ||||| | | |||||| || | | ||||||||| Sbjct 67453 AACCC-GTTCCGATTCCATCGCTGCCATTGACTAAAATCATGGGTATAATGGGAACGTAG 67511 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTC 117268 |||| || || | | |||| ||||| | | | ||||||| | | || | Sbjct 67512 TACTCCGGTTCGATTTTCAGATTATCGTCGTTCAGATGATTGAGCAATGGCTGATCTTTA 67571 Query 117269 GGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGA-GTGAAAATGTAACGAGAGCTTGC 117327 || ||| |||| || | |||||| || | ||| |||||| |||| || || Sbjct 67572 ACATTGAAAATGTGTTTTG-CCACGGGACTTAACATCGTGTGAATGTATCGAGGACTCGC 67630 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||| || ||||| || ||| || ||||||||||| ||| | || | | ||| || | Sbjct 67631 AGCGTCTTTGCCGCCTTGAAGTCGAGTACCGAATTGGCCAATGGGTTGAAGGAGATTGAT 67690 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||||||| ||||||||||||||| || || |||| Sbjct 67691 GTTGTTGCTGCCCACAAAGTTTTGTGCTAAATTGA 67725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547115182292200