Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 179 4e-40
seq12614 84.2 2e-11
seq12177 82.4 9e-11
>seq12471
Length=105862
Score = 179 bits (198), Expect = 4e-40
Identities = 178/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||||||| || || || |||||||| || || | || || ||| || ||
Sbjct 72367 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACATTGGAAGTCGAGCCAAGT 72308
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| | |||||||| || || ||||| ||||||||||| || |||||
Sbjct 72307 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCGCCCGACCAA 72248
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || ||||||||||| ||||||||||||| ||| || | ||| || || ||
Sbjct 72247 CAGCGATTGATCTTTGCTGGTAAACAACTCGAGGATGGTCGCACATTGAGC-GATTACAA 72189
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||| || || | || ||| | |||||||||||
Sbjct 72188 CATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGGCTTCGCGGTGG 72141
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||||||| || ||||| || ||||| |||||||| || |||||| || |
Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | || ||||||||||| || ||||| ||||| || || || ||
Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| |||||||| ||||| || | ||||||| || || || ||||| ||
Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
| || || |||||||| |||||
Sbjct 72415 ATTCAGAAAGAATCCACCCTTCA 72393
Score = 132 bits (146), Expect = 5e-26
Identities = 154/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || |||||||| || ||| | |||||||| | ||
Sbjct 72823 ATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGT 72764
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | || || || || || || || ||||| || ||||| || ||
Sbjct 72763 GACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCAA 72704
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||| | ||||| ||||| || ||| | || |||| |||||| | ||| || || ||
Sbjct 72703 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGC-GATTACAA 72645
Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||||||||||| |||
Sbjct 72644 CATCCAAAAGGAATCCACTCTGCAT 72620
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| ||||| || || || |||||||| || || | || || ||| | ||
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | || || || || || ||||| || || || || ||||| ||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATAA 27584
||||||||||| |||||||| || |||||||| |||| ||| || | |||| || || ||
Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGC-GATTACAA 72934
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620
| || || ||||| || |||||| | || || ||
Sbjct 72933 CATTCAGAAAGAATCAACGCTTCATTTGGTTTTACG 72898
Score = 129 bits (142), Expect = 7e-25
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| ||||| || || || || || || ||||| | || || ||| || |
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||||| ||| |||| || || || || ||||| || || ||||||||||| ||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583
|||||| | || || || ||||| ||| | || |||| ||| || | ||| ||||| |
Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGC-GACTACA 73453
Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608
| | || || ||||| ||||||||
Sbjct 73452 ACATTCAGAAAGAATCAACTCTTCA 73428
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || ||||| || || || || || || ||||||||| | ||||| ||| ||
Sbjct 73861 ATCATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCA 73802
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
| || | || | || ||||||| || |||||||| ||||| ||||||||||| ||
Sbjct 73801 AGCGACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGAT 73742
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTA 27581
|| ||||| | ||||| ||||| ||||| ||||| || | || || | |||| |||||
Sbjct 73741 CAACAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTAGC-GACTA 73683
Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| |||| || ||||| || | ||| | || |||
Sbjct 73682 CAACATCCAGAAAGAATCGACCTTGCATTTGGTATTG 73646
>seq12614
Length=760689
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || ||||| | ||||| || || ||||| |||||||||||| |
Sbjct 131537 AATGCAGATTTTCGTTAAGACTTTAACCGGTAAAACCATTACACTTGAGGTTGAGCCGTC 131478
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513
||||| ||| | ||| ||||||| || |||||||| || ||||| |||
Sbjct 131477 TGATACCATAGAGAATGTGAAGGCGAAGATTCAGGATAAAGAGGGTATT 131429
>seq12177
Length=61224
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461
||||||||| ||||| |||||||| ||||| || || || |||||| | || ||||| |
Sbjct 22379 TATAATGCAGATCTTCGTCAAGACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 22438
Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|||| || | |||| |||| ||||||||||| ||||| || ||
Sbjct 22439 GTCGGATACTATCGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGG 22486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570205327437680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |