Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12471 179 4e-40 seq12614 84.2 2e-11 seq12177 82.4 9e-11 >seq12471 Length=105862 Score = 179 bits (198), Expect = 4e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || |||||||| || || | || || ||| || || Sbjct 72367 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACATTGGAAGTCGAGCCAAGT 72308 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||| || || ||||| ||||||||||| || ||||| Sbjct 72307 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCGCCCGACCAA 72248 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || ||||||||||| ||||||||||||| ||| || | ||| || || || Sbjct 72247 CAGCGATTGATCTTTGCTGGTAAACAACTCGAGGATGGTCGCACATTGAGC-GATTACAA 72189 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || | || ||| | ||||||||||| Sbjct 72188 CATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGGCTTCGCGGTGG 72141 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || ||||| || ||||| |||||||| || |||||| || | Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || ||||||||||| || ||||| ||||| || || || || Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| ||||| || | ||||||| || || || ||||| || Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || |||||||| ||||| Sbjct 72415 ATTCAGAAAGAATCCACCCTTCA 72393 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || |||||||| || ||| | |||||||| | || Sbjct 72823 ATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGT 72764 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || || || || || ||||| || ||||| || || Sbjct 72763 GACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCAA 72704 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | ||||| ||||| || ||| | || |||| |||||| | ||| || || || Sbjct 72703 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGC-GATTACAA 72645 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||||||||||| ||| Sbjct 72644 CATCCAAAAGGAATCCACTCTGCAT 72620 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || || |||||||| || || | || || ||| | || Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || || || ||||| || || || || ||||| || Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATAA 27584 ||||||||||| |||||||| || |||||||| |||| ||| || | |||| || || || Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGC-GATTACAA 72934 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | || || ||||| || |||||| | || || || Sbjct 72933 CATTCAGAAAGAATCAACGCTTCATTTGGTTTTACG 72898 Score = 129 bits (142), Expect = 7e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||| || || || || || || ||||| | || || ||| || | Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| |||| || || || || ||||| || || ||||||||||| || Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 |||||| | || || || ||||| ||| | || |||| ||| || | ||| ||||| | Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGC-GACTACA 73453 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 | | || || ||||| |||||||| Sbjct 73452 ACATTCAGAAAGAATCAACTCTTCA 73428 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| || || || || || || ||||||||| | ||||| ||| || Sbjct 73861 ATCATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCA 73802 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | || | || ||||||| || |||||||| ||||| ||||||||||| || Sbjct 73801 AGCGACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGAT 73742 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTA 27581 || ||||| | ||||| ||||| ||||| ||||| || | || || | |||| ||||| Sbjct 73741 CAACAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTAGC-GACTA 73683 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || |||| || ||||| || | ||| | || ||| Sbjct 73682 CAACATCCAGAAAGAATCGACCTTGCATTTGGTATTG 73646 >seq12614 Length=760689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| | ||||| || || ||||| |||||||||||| | Sbjct 131537 AATGCAGATTTTCGTTAAGACTTTAACCGGTAAAACCATTACACTTGAGGTTGAGCCGTC 131478 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513 ||||| ||| | ||| ||||||| || |||||||| || ||||| ||| Sbjct 131477 TGATACCATAGAGAATGTGAAGGCGAAGATTCAGGATAAAGAGGGTATT 131429 >seq12177 Length=61224 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 ||||||||| ||||| |||||||| ||||| || || || |||||| | || ||||| | Sbjct 22379 TATAATGCAGATCTTCGTCAAGACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 22438 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| || | |||| |||| ||||||||||| ||||| || || Sbjct 22439 GTCGGATACTATCGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGG 22486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570205327437680