Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq13338 116 4e-21 seq6342 84.2 3e-11 >seq13338 Length=646138 Score = 116 bits (128), Expect = 4e-21 Identities = 137/184 (74%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 89211 CATATAGAACTTAGGAGGTGGGCTGATATATTTATTATCGCGCCACTAACGGCTAATACT 89270 ||||| ||||| | || ||||||||| ||||| |||| || || || |||||||| Sbjct 624938 CATATTGAACTACGTAGATGGGCTGATTTATTTGTTATTGCTCCGTTAGATGCTAATACG 624997 Query 89271 CTAGCGAAGATAGCTAATGGTATATGCGACAACTTACTAACTTCTATAGTTAGGGCATGG 89330 |||| || || |||||||| || || || || ||| | |||| | ||| || || ||| Sbjct 624998 TTAGCCAAAATGGCTAATGGAATGTGTGATAATTTAATTACTTGTGTAGCAAGAGCTTGG 625057 Query 89331 GATATATCAAAGCCCCTTATTTTTTGTCCTGCCATGAATACTCTAATGTGGGAACATCCT 89390 || ||| || ||| |||| || |||||||||||||| | |||||||||||||| Sbjct 625058 GACCCTAAAAAACCTCTTCTTTTCTGCCCTGCCATGAATACATTTATGTGGGAACATCC- 625116 Query 89391 ATTA 89394 |||| Sbjct 625117 ATTA 625120 >seq6342 Length=239981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 32850 ATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGATTAACAGCAATAGGTCCT 32909 ||||| |||||||| || ||||||||||||| ||| ||||| | || || |||| || Sbjct 168596 ATAAACTCTTTTATCCACGTTATAATGTATACTTACTACGGCATTGCATCATTAGGGCCC 168537 Query 32910 TCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATCATACAATTG 32960 | || ||||||| | ||||||||||||||||| || | || ||| || Sbjct 168536 AAATGGCAAAAATATTTGTGGTGGAAAAAATATTTCACAACAATGCAAATG 168486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603069671477360