Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12471 125 4e-24 seq13894 123 2e-23 >seq12471 Length=105862 Score = 125 bits (138), Expect = 4e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| | ||| ||||| ||||| ||| ||||||||| ||||| ||||| Sbjct 72140 GCCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCT 72199 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || ||||||||||| ||||| || || ||||||||||| ||||| Sbjct 72200 CAATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGG 72259 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCC 34656 | |||||| |||||| |||||| || | | ||| |||| ||| | ||| Sbjct 72260 AATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGG--CTCG 72317 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || || || || || | ||||| ||||| |||||||| Sbjct 72318 ACTTCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCT 34554 |||||| || ||||| || || |||||||| || || | |||||| || | ||| Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTG--CGACCATCT 73478 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||||||||| || || ||||||||||| || || || | || || |||||| Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCCACTTCCACGGTTATC 34671 |||| || | ||| || | ||| || | ||| | ||| ||||||| ||| || Sbjct 73539 TGGATC-TTGGCTTTCACATTCTCAATGGTATCACTTGG--CTCGACTTCCAAGGTAATG 73595 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || | ||||| || || |||||||| Sbjct 73596 GTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | | | |||||| || || || || || || ||||| ||||| Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | |||||| || || || || ||||||||||| ||||| || Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-----ACGATAAAATTGTGTCTTCGCTCT 34654 | || || |||||| ||||| ||||| |||| | ||| ||| | || Sbjct 73234 ATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGAT---AGTGTCGCTTGG--CT 73288 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | || || ||||| || || | ||||| |||||||||||||| Sbjct 73289 CAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | |||||||| |||||| |||||||| ||||| ||||| Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | |||||| || || || || ||||||||||| ||||| || Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| || ||| |||||| Sbjct 72717 ATCCCCTCTTTATCTTGGATCTT 72739 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 |||||||| | | | |||||| || || ||| || || |||||||| || || | Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | || || | |||||||||||||| || | ||||||||| || || | Sbjct 72429 AAAGTG--CGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTG 72486 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCT 34654 | | ||| ||||| ||| ||| ||| | ||| || | || |||| ||| | || Sbjct 72487 GGATTCCTTCCTTATCT-TGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGG--CT 72543 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | || || || || || || | ||||| ||||| |||||||| Sbjct 72544 CAACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||| |||||||| | || || || || ||||| || || |||||| || |||| Sbjct 73646 CAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCGTC 73705 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| || || || || || || || || |||||||| || || || | ||| ||||| || Sbjct 73706 TTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTATC 73765 Query 34614 TGTGATCTTTTGTTTTAACGATAAA-ATTGTGTC--TTCGCTCTCCACTTCCACGGTTAT 34670 ||||| | || ||| | || ||||| || |||| ||| |||| || || Sbjct 73766 CTGAATCTTG-GCCTTCACGTTCTCGATCGTGTCGCTTGGCTC--CACCTCCAAAGTAAT 73822 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || | ||||| ||||||||||||||| Sbjct 73823 AGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATG 73859 >seq13894 Length=1211295 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTT-TGAATGTTATAATCTGA 34538 |||||||| | ||||| ||| | ||| || || |||||| || ||||| |||||||| Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | ||||| ||||||||||||||||| || |||||||| || ||||| || Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| ||| | || ||| | ||||| || || | Sbjct 231838 AATGCCTTCTTTGTCTTGGAT-TTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || || ||||| |||||||| ||||||||||| Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 118 bits (130), Expect = 7e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||| |||||||| ||||| ||||| || ||||| ||||| || Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||| || || ||||| |||||||| |||||||| || || Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTC--TCC 34656 | || || ||||| ||| ||| | || || | ||| ||||| || | || Sbjct 231610 ATGCCTTCTTTGTCCTGGAT-TTTCGCCTTGACATTCTCAATGGTGTC--CGATGGTTCG 231666 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || || || |||||||| |||||||| ||||||||||| Sbjct 231667 ACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | |||||| |||| ||| || || ||||| || ||||| || || || Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||| || || ||||| ||||| || || || ||||| || Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || || || ||| ||| | || ||| | ||| || || ||| || Sbjct 232295 ATACCTTCTTTATCCTGGAT-TTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGAC 232353 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | ||||| || ||||||||||| |||||||||||||||||||| || Sbjct 232354 TTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||| || | ||| || || ||| || || ||||| ||||| || Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| || || || || || || || || || || || || Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | |||||| | ||| |||||| || || Sbjct 232067 ATGCCCTCTTTGTCTTGGAT-TTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGAC 232125 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || ||||| |||||||||||||||||||| Sbjct 232126 TTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314673064630187