Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 125 4e-24
seq13894 123 2e-23
>seq12471
Length=105862
Score = 125 bits (138), Expect = 4e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | ||| | ||| ||||| ||||| ||| ||||||||| ||||| |||||
Sbjct 72140 GCCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCT 72199
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| ||| || | || || ||||||||||| ||||| || || ||||||||||| |||||
Sbjct 72200 CAATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGG 72259
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCC 34656
| |||||| |||||| |||||| || | | ||| |||| ||| | |||
Sbjct 72260 AATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGG--CTCG 72317
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||| || || || || || || | ||||| ||||| ||||||||
Sbjct 72318 ACTTCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/215 (72%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCT 34554
|||||| || ||||| || || |||||||| || || | |||||| || | |||
Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTG--CGACCATCT 73478
Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614
|| | |||||||||||| || || ||||||||||| || || || | || || ||||||
Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538
Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCCACTTCCACGGTTATC 34671
|||| || | ||| || | ||| || | ||| | ||| ||||||| ||| ||
Sbjct 73539 TGGATC-TTGGCTTTCACATTCTCAATGGTATCACTTGG--CTCGACTTCCAAGGTAATG 73595
Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || | ||||| || || ||||||||
Sbjct 73596 GTTTTTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
Score = 89.7 bits (98), Expect = 3e-13
Identities = 160/232 (69%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|||||||| | | | |||||| || || || || || || ||||| |||||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || | ||||| | |||||| || || || || ||||||||||| ||||| ||
Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-----ACGATAAAATTGTGTCTTCGCTCT 34654
| || || |||||| ||||| ||||| |||| | ||| ||| | ||
Sbjct 73234 ATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGAT---AGTGTCGCTTGG--CT 73288
Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||||| | || || ||||| || || | ||||| ||||||||||||||
Sbjct 73289 CAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | || | |||||||| |||||| |||||||| ||||| |||||
Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||| || | ||||| | |||||| || || || || ||||||||||| ||||| ||
Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||| || ||| ||||||
Sbjct 72717 ATCCCCTCTTTATCTTGGATCTT 72739
Score = 86.0 bits (94), Expect = 4e-12
Identities = 162/232 (70%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537
|||||||| | | | |||||| || || ||| || || |||||||| || || |
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|||||| || | || || | |||||||||||||| || | ||||||||| || || |
Sbjct 72429 AAAGTG--CGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTG 72486
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCT 34654
| | ||| ||||| ||| ||| ||| | ||| || | || |||| ||| | ||
Sbjct 72487 GGATTCCTTCCTTATCT-TGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGG--CT 72543
Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||||| | || || || || || || | ||||| ||||| ||||||||
Sbjct 72544 CAACTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/217 (70%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553
||| |||||||| | || || || || ||||| || || |||||| || ||||
Sbjct 73646 CAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCGTC 73705
Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613
||| || || || || || || || || |||||||| || || || | ||| ||||| ||
Sbjct 73706 TTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTATC 73765
Query 34614 TGTGATCTTTTGTTTTAACGATAAA-ATTGTGTC--TTCGCTCTCCACTTCCACGGTTAT 34670
||||| | || ||| | || ||||| || |||| ||| |||| || ||
Sbjct 73766 CTGAATCTTG-GCCTTCACGTTCTCGATCGTGTCGCTTGGCTC--CACCTCCAAAGTAAT 73822
Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| || || | ||||| |||||||||||||||
Sbjct 73823 AGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATG 73859
>seq13894
Length=1211295
Score = 123 bits (136), Expect = 2e-23
Identities = 167/229 (73%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTT-TGAATGTTATAATCTGA 34538
|||||||| | ||||| ||| | ||| || || |||||| || ||||| ||||||||
Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| ||||| | ||||| ||||||||||||||||| || |||||||| || ||||| ||
Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657
| || || |||||| ||| ||| | || ||| | ||||| || || |
Sbjct 231838 AATGCCTTCTTTGTCTTGGAT-TTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| | || || || || || ||||| |||||||| |||||||||||
Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 118 bits (130), Expect = 7e-22
Identities = 167/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||||| |||||||| ||||| ||||| || ||||| ||||| ||
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||||| | ||||| | ||| || || ||||| |||||||| |||||||| || ||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTC--TCC 34656
| || || ||||| ||| ||| | || || | ||| ||||| || | ||
Sbjct 231610 ATGCCTTCTTTGTCCTGGAT-TTTCGCCTTGACATTCTCAATGGTGTC--CGATGGTTCG 231666
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| | ||| || || || |||||||| |||||||| |||||||||||
Sbjct 231667 ACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 113 bits (124), Expect = 3e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|||||||| | |||||| |||| ||| || || ||||| || ||||| || || ||
Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||||| | ||||| | ||| || || ||||| ||||| || || || ||||| ||
Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || || || || ||| ||| | || ||| | ||| || || ||| ||
Sbjct 232295 ATACCTTCTTTATCCTGGAT-TTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGAC 232353
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
||| | ||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 232354 TTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||||| || | ||| || || ||| || || ||||| ||||| ||
Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | ||| || || || || || || || || || || || ||
Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| ||||| |||||| ||| ||| | |||||| | ||| |||||| || ||
Sbjct 232067 ATGCCCTCTTTGTCTTGGAT-TTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGAC 232125
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || ||||| || ||||| ||||||||||||||||||||
Sbjct 232126 TTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314673064630187
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |