Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 123 2e-23
seq12471 95.1 9e-15
>seq13894
Length=1211295
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| ||||||||| | || || || ||||| | || |||||| || |
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAAC-CATC 231658
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || | ||| ||||| ||||| ||||||||||| | || ||
Sbjct 231657 GGACACCATTGAGAAT--GTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGAC 231600
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| ||||| ||||||||||| ||||| |||||||| || | || | |||||||||||||
Sbjct 231599 CAACAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTAC 231540
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || || ||| |||||||||||||||| ||| | || ||
Sbjct 231539 AACATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGG 231490
Score = 113 bits (124), Expect = 3e-20
Identities = 166/234 (71%), Gaps = 11/234 (5%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| ||||| ||||||||| | |||||||| || || |||| |||||| |
Sbjct 231946 AATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTC 231887
Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
||| |||||||| || || ||||| ||||||||||| |||| |
Sbjct 231886 CGA-----TACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCG 231832
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| ||||| || || || |||||||| |||||| |||| || | || | |||||| |||
Sbjct 231831 GATCAGCAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGAT 231772
Query 27964 TACAACATCCAAAAAGAGAGC-ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| |||| | | || | ||| | || |||||||| | |||||
Sbjct 231771 TACAACATCCAGAAAGGAATCGACCCTTCATCTTGTGCTGCGTTTGAGAGGCGG 231718
Score = 98.7 bits (108), Expect = 7e-16
Identities = 164/235 (70%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843
|| |||||||| |||||||||||||| | || || || || || | || |||||
Sbjct 232407 AGGAAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAG 232348
Query 27844 AGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901
|||| |||| | || || || ||||| || ||||||||| | ||
Sbjct 232347 CCTTCCGATACGATTGAAAAC--GTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCAC 232290
Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961
||| |||||||| ||||||||||| || || |||||||| || | || | ||| ||||
Sbjct 232289 CGGATCAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCG 232230
Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||||||||| || || || | ||| |||| |||||||| | |||||
Sbjct 232229 ACTACAACATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGG 232175
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847
||||| |||||||||||||| | ||||| ||| || || | || |||||| | ||
Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114
Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| || | || || || ||||| |||||||| || | || || |
Sbjct 232113 GACACCATTGAAAAC--GTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATC 232056
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||||| || || || || ||||| |||||||| || | || | ||||||||||||||
Sbjct 232055 AGCAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACA 231996
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| |||||| || | ||| | || |||||||| | || ||
Sbjct 231995 ACATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGG 231947
>seq12471
Length=105862
Score = 95.1 bits (104), Expect = 9e-15
Identities = 139/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846
||||| |||||||| ||||| || ||||| ||| |||||| | || || || ||||
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || | ||| || ||| || || ||||||||||| |||| |||
Sbjct 73280 GAC-ACTATCGAGAAT--GTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGAT 73224
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || || || ||||| || |||||||||||||| || | ||||| | |||||||
Sbjct 73223 CAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTAC 73164
Query 27967 AACATCCAAAAAGA 27980
|||||||| |||||
Sbjct 73163 AACATCCAGAAAGA 73150
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962
||| || || || || ||||| || |||||||||||||| || | || | ||| |||
Sbjct 72710 GGATCAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGA 72651
Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||||||| || |||| ||||||||||| | || ||| | || ||
Sbjct 72650 TTACAACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGG 72597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355798475881053
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |