Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13894 123 2e-23 seq12471 95.1 9e-15 >seq13894 Length=1211295 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||||||| | || || || ||||| | || |||||| || | Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAAC-CATC 231658 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| ||||| ||||||||||| | || || Sbjct 231657 GGACACCATTGAGAAT--GTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGAC 231600 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||||||||| ||||| |||||||| || | || | ||||||||||||| Sbjct 231599 CAACAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTAC 231540 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || ||| |||||||||||||||| ||| | || || Sbjct 231539 AACATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGG 231490 Score = 113 bits (124), Expect = 3e-20 Identities = 166/234 (71%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| ||||||||| | |||||||| || || |||| |||||| | Sbjct 231946 AATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTC 231887 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| |||||||| || || ||||| ||||||||||| |||| | Sbjct 231886 CGA-----TACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCG 231832 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || |||||||| |||||| |||| || | || | |||||| ||| Sbjct 231831 GATCAGCAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGAT 231772 Query 27964 TACAACATCCAAAAAGAGAGC-ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| |||| | | || | ||| | || |||||||| | ||||| Sbjct 231771 TACAACATCCAGAAAGGAATCGACCCTTCATCTTGTGCTGCGTTTGAGAGGCGG 231718 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || |||||||| |||||||||||||| | || || || || || | || ||||| Sbjct 232407 AGGAAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAG 232348 Query 27844 AGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 |||| |||| | || || || ||||| || ||||||||| | || Sbjct 232347 CCTTCCGATACGATTGAAAAC--GTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCAC 232290 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| |||||||| ||||||||||| || || |||||||| || | || | ||| |||| Sbjct 232289 CGGATCAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCG 232230 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| || || || | ||| |||| |||||||| | ||||| Sbjct 232229 ACTACAACATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGG 232175 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| |||||||||||||| | ||||| ||| || || | || |||||| | || Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | || || || ||||| |||||||| || | || || | Sbjct 232113 GACACCATTGAAAAC--GTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATC 232056 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || ||||| |||||||| || | || | |||||||||||||| Sbjct 232055 AGCAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACA 231996 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| || | ||| | || |||||||| | || || Sbjct 231995 ACATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGG 231947 >seq12471 Length=105862 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846 ||||| |||||||| ||||| || ||||| ||| |||||| | || || || |||| Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| || || ||||||||||| |||| ||| Sbjct 73280 GAC-ACTATCGAGAAT--GTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGAT 73224 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || || ||||| || |||||||||||||| || | ||||| | ||||||| Sbjct 73223 CAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTAC 73164 Query 27967 AACATCCAAAAAGA 27980 |||||||| ||||| Sbjct 73163 AACATCCAGAAAGA 73150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| || || || || ||||| || |||||||||||||| || | || | ||| ||| Sbjct 72710 GGATCAACAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGA 72651 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||| || |||| ||||||||||| | || ||| | || || Sbjct 72650 TTACAACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGG 72597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355798475881053